Wall clock time and date at job start Sun Mar 29 2020 21:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29377 * 124.69883 * 2 1 4 4 C 1.30947 * 117.46226 * 179.97438 * 3 2 1 5 5 C 1.36786 * 113.92226 * 359.97438 * 4 3 2 6 6 C 1.46556 * 126.17791 * 179.97438 * 5 4 3 7 7 O 1.21731 * 120.00422 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99899 * 180.02562 * 6 5 4 9 9 C 1.36895 * 119.99852 * 179.97438 * 8 6 5 10 10 H 1.07995 * 120.00078 * 359.72762 * 9 8 6 11 11 C 1.39009 * 119.99569 * 179.97438 * 9 8 6 12 12 N 1.31404 * 119.99804 * 180.02562 * 11 9 8 13 13 Si 1.86789 * 120.00374 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47675 * 89.99389 * 13 11 9 15 15 H 1.48501 * 109.47162 * 209.99561 * 13 11 9 16 16 H 1.48498 * 109.47248 * 329.99609 * 13 11 9 17 17 S 1.70921 * 124.70248 * 180.28498 * 2 1 3 18 18 H 1.09003 * 109.46740 * 89.97761 * 1 2 3 19 19 H 1.08997 * 109.47282 * 209.97582 * 1 2 3 20 20 H 1.09002 * 109.46813 * 329.98062 * 1 2 3 21 21 H 1.08001 * 123.03791 * 179.97438 * 4 3 2 22 22 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 23 23 H 0.96991 * 119.99821 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2436 1.0637 0.0000 4 6 3.5426 0.8987 0.0005 5 6 3.9354 -0.4115 0.0016 6 6 5.3169 -0.9006 0.0018 7 8 6.2425 -0.1099 0.0006 8 7 5.5627 -2.2257 0.0023 9 6 6.8532 -2.6825 0.0020 10 1 7.6743 -1.9810 -0.0031 11 6 7.1066 -4.0493 0.0031 12 7 8.3453 -4.4878 0.0034 13 14 5.6864 -5.2626 0.0043 14 1 5.3097 -5.5853 -1.3954 15 1 6.0977 -6.5055 0.7052 16 1 4.5226 -4.6617 0.7041 17 16 2.4802 -1.4052 -0.0070 18 1 -0.3633 0.0004 -1.0277 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5142 21 1 4.2408 1.7227 0.0002 22 1 4.8252 -2.8558 0.0030 23 1 8.5221 -5.4415 0.0038 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226231201.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:22 Heat of formation + Delta-G solvation = -18.853999 kcal Electronic energy + Delta-G solvation = -11423.859595 eV Core-core repulsion = 9169.982686 eV Total energy + Delta-G solvation = -2253.876909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.99966 -39.92380 -36.24357 -34.00128 -33.09691 -29.90877 -27.13616 -25.09812 -22.65921 -21.31886 -19.81818 -19.29525 -17.45767 -17.12479 -16.29052 -16.11269 -15.34680 -15.24073 -14.87530 -14.40396 -14.36682 -13.40052 -13.17084 -13.07516 -12.67544 -12.53255 -12.07261 -11.71023 -11.02027 -10.71464 -10.57310 -10.41358 -9.87431 -8.56746 -6.15172 -0.76417 0.15629 0.56724 1.22928 1.26647 1.37063 1.47754 2.11938 2.16725 2.60978 3.05777 3.16805 3.96723 4.05118 4.29234 4.66439 4.72469 4.99474 5.21519 5.36037 5.75782 6.35656 6.58017 6.64194 7.12836 7.64493 8.59075 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.045982 B = 0.009726 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.790088 B = 2878.299611 C = 3471.940833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.059 3.941 3 N -0.495 5.495 4 C 0.100 3.900 5 C -0.293 4.293 6 C 0.514 3.486 7 O -0.615 6.615 8 N -0.565 5.565 9 C -0.334 4.334 10 H 0.067 0.933 11 C -0.003 4.003 12 N -0.911 5.911 13 Si 0.948 3.052 14 H -0.248 1.248 15 H -0.260 1.260 16 H -0.236 1.236 17 S 0.178 5.822 18 H 0.109 0.891 19 H 0.108 0.892 20 H 0.100 0.900 21 H 0.181 0.819 22 H 0.386 0.614 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.123 0.834 -0.040 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.216 4.216 3 N -0.209 5.209 4 C -0.058 4.058 5 C -0.418 4.418 6 C 0.302 3.698 7 O -0.503 6.503 8 N -0.203 5.203 9 C -0.463 4.463 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.549 5.549 13 Si 0.766 3.234 14 H -0.171 1.171 15 H -0.184 1.184 16 H -0.159 1.159 17 S 0.434 5.566 18 H 0.128 0.872 19 H 0.127 0.873 20 H 0.119 0.881 21 H 0.198 0.802 22 H 0.222 0.778 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.847 0.560 -0.049 19.855 hybrid contribution 0.974 0.099 0.008 0.979 sum -18.873 0.660 -0.040 18.885 Atomic orbital electron populations 1.20783 0.81147 1.06089 1.05851 1.28239 1.03774 0.89994 0.99620 1.66211 1.04221 1.32039 1.18472 1.22404 0.91194 0.95045 0.97133 1.25905 0.97571 0.98849 1.19428 1.16804 0.86781 0.82457 0.83725 1.90665 1.45936 1.55931 1.57760 1.41935 1.07631 1.05609 1.65173 1.19110 0.83226 0.93108 1.50885 0.91471 1.26117 1.00549 0.98567 0.95280 1.69752 1.21147 1.16719 1.47273 0.85602 0.78364 0.78545 0.80849 1.17136 1.18365 1.15915 1.83556 0.95040 1.11479 1.66561 0.87237 0.87348 0.88094 0.80157 0.77816 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.46 71.24 0.75 -0.23 14 2 C 0.06 1.41 7.37 88.47 0.65 2.06 14 3 N -0.49 -15.03 10.50 -189.49 -1.99 -17.02 14 4 C 0.10 3.56 11.17 84.48 0.94 4.50 14 5 C -0.29 -11.42 6.52 24.10 0.16 -11.26 14 6 C 0.51 25.88 7.73 86.41 0.67 26.55 14 7 O -0.62 -36.39 16.45 -4.45 -0.07 -36.47 14 8 N -0.57 -28.44 5.08 -310.72 -1.58 -30.02 14 9 C -0.33 -19.77 10.16 84.09 0.85 -18.92 14 10 H 0.07 4.66 7.38 -2.91 -0.02 4.64 14 11 C 0.00 -0.18 5.50 84.94 0.47 0.29 14 12 N -0.91 -53.28 13.96 21.68 0.30 -52.98 14 13 Si 0.95 37.73 27.74 68.60 1.90 39.64 14 14 H -0.25 -9.21 7.11 99.48 0.71 -8.50 14 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 16 H -0.24 -8.15 6.52 99.48 0.65 -7.50 14 17 S 0.18 4.87 22.30 -56.49 -1.26 3.61 14 18 H 0.11 0.99 8.14 -2.39 -0.02 0.97 14 19 H 0.11 0.83 8.14 -2.39 -0.02 0.81 14 20 H 0.10 1.14 8.14 -2.39 -0.02 1.12 14 21 H 0.18 6.40 8.06 -2.91 -0.02 6.38 14 22 H 0.39 16.52 4.94 -92.71 -0.46 16.06 14 23 H 0.29 15.11 8.31 -92.71 -0.77 14.34 14 Total: -1.00 -73.65 228.77 2.52 -71.12 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.73 Total: 19.12 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.49 Total: 2.99 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.27 Total: -100.01 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.07 Total: -36.47 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.90 Total: 39.64 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.26 Total: 3.61 kcal Total: -73.65 2.52 -71.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226231201.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.270 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds