Wall clock time and date at job start Sun Mar 29 2020 21:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47009 * 177.41406 * 3 2 1 5 5 C 1.50706 * 109.47004 * 57.41741 * 3 2 1 6 6 H 1.07998 * 119.99915 * 244.15874 * 5 3 2 7 7 C 1.37880 * 119.99646 * 64.15768 * 5 3 2 8 8 N 1.31510 * 120.00274 * 9.81711 * 7 5 3 9 9 Si 1.86800 * 119.99660 * 189.81359 * 7 5 3 10 10 H 1.48497 * 109.46982 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47330 * 300.00443 * 9 7 5 12 12 H 1.48502 * 109.46909 * 60.00570 * 9 7 5 13 13 N 1.46894 * 109.47379 * 297.41839 * 3 2 1 14 14 C 1.46902 * 111.00226 * 273.82689 * 13 3 2 15 15 H 1.08999 * 110.43417 * 39.15929 * 14 13 3 16 16 C 1.54890 * 110.48148 * 276.62218 * 14 13 3 17 17 C 1.54893 * 102.74610 * 203.37691 * 16 14 13 18 18 C 1.54262 * 104.19473 * 37.94284 * 17 16 14 19 19 H 1.08999 * 110.03341 * 95.67584 * 18 17 16 20 20 C 1.53006 * 110.03053 * 217.05575 * 18 17 16 21 21 C 1.53869 * 106.60076 * 336.39075 * 18 17 16 22 22 H 1.08997 * 109.47170 * 304.99601 * 1 2 3 23 23 H 1.08998 * 109.46870 * 65.00161 * 1 2 3 24 24 H 1.09010 * 109.46791 * 184.99586 * 1 2 3 25 25 H 1.08998 * 109.47576 * 240.00005 * 2 1 3 26 26 H 1.08999 * 109.47673 * 120.00267 * 2 1 3 27 27 H 0.96999 * 120.00326 * 357.08669 * 8 7 5 28 28 H 1.00904 * 110.99723 * 37.77615 * 13 3 2 29 29 H 1.08999 * 110.75859 * 321.69210 * 16 14 13 30 30 H 1.09004 * 110.75771 * 85.06590 * 16 14 13 31 31 H 1.09004 * 110.48303 * 156.62021 * 17 16 14 32 32 H 1.08996 * 110.48611 * 279.12720 * 17 16 14 33 33 H 1.09001 * 109.46942 * 58.54643 * 20 18 17 34 34 H 1.08994 * 109.46943 * 178.54967 * 20 18 17 35 35 H 1.09003 * 109.46669 * 298.54349 * 20 18 17 36 36 H 1.09009 * 110.03146 * 240.71560 * 21 18 17 37 37 H 1.08994 * 110.03842 * 119.28532 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 0.0464 5 6 1.4860 2.1712 1.1973 6 1 0.8159 3.0067 1.0584 7 6 1.8347 1.7711 2.4698 8 7 2.7929 0.8869 2.6417 9 14 0.9461 2.4850 3.9497 10 1 1.5036 1.8957 5.1935 11 1 1.1296 3.9584 3.9739 12 1 -0.5017 2.1679 3.8581 13 7 1.6020 2.1168 -1.2293 14 6 2.5481 1.8769 -2.3272 15 1 2.9106 0.8493 -2.2994 16 6 3.7326 2.8719 -2.2489 17 6 4.2494 2.9034 -3.7088 18 6 2.9682 2.8352 -4.5652 19 1 2.6585 3.8395 -4.8544 20 6 3.2161 1.9841 -5.8122 21 6 1.8865 2.1826 -3.6868 22 1 -0.3633 0.5894 0.8418 23 1 -0.3633 0.4343 -0.9314 24 1 -0.3633 -1.0239 0.0895 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 3.2255 0.4847 1.8724 28 1 0.6694 1.8298 -1.4865 29 1 3.3884 3.8587 -1.9396 30 1 4.5043 2.5016 -1.5739 31 1 4.7889 3.8306 -3.9024 32 1 4.8887 2.0429 -3.9058 33 1 3.5261 0.9829 -5.5130 34 1 2.2985 1.9208 -6.3971 35 1 4.0002 2.4424 -6.4149 36 1 1.5378 1.2587 -4.1485 37 1 1.0518 2.8700 -3.5496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227203141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:31 Heat of formation + Delta-G solvation = -31.418954 kcal Electronic energy + Delta-G solvation = -14734.540125 eV Core-core repulsion = 12510.290682 eV Total energy + Delta-G solvation = -2224.249443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.52343 -35.99401 -32.48633 -30.91808 -29.49889 -27.66521 -25.31563 -23.98336 -23.49381 -20.31611 -19.39699 -19.06790 -16.70266 -15.60360 -14.80926 -14.41435 -13.76095 -13.55265 -13.22853 -13.12336 -13.01403 -12.56256 -12.19051 -11.89228 -11.17619 -10.81250 -10.80408 -10.72822 -10.66155 -10.49890 -10.36721 -10.24675 -10.09368 -9.96793 -9.95421 -9.73189 -8.62270 -8.13634 -7.23567 -6.25762 -3.92641 3.48749 3.49886 3.68709 4.57773 4.84177 4.91537 4.93914 5.32199 5.44372 5.54409 5.57378 5.74595 5.79325 5.87078 5.97796 6.08275 6.09990 6.12385 6.16681 6.27239 6.29444 6.35881 6.38376 6.59263 6.64720 6.72325 6.79189 7.04827 7.15320 7.29705 7.33535 8.04809 8.36049 8.55188 8.72926 8.99680 9.75349 11.10797 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.007678 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.384184 B = 3645.766006 C = 3868.899112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.204 3.796 4 H 0.024 0.976 5 C -0.570 4.570 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.671 5.671 14 C 0.082 3.918 15 H 0.033 0.967 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.093 4.093 19 H 0.068 0.932 20 C -0.143 4.143 21 C -0.120 4.120 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.027 0.973 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.268 0.732 28 H 0.326 0.674 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 1.213 -12.150 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.096 3.904 4 H 0.042 0.958 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.302 5.302 14 C -0.029 4.029 15 H 0.051 0.949 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.112 4.112 19 H 0.086 0.914 20 C -0.200 4.200 21 C -0.158 4.158 22 H 0.091 0.909 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.248 1.807 -10.309 10.469 hybrid contribution -0.131 -1.045 -1.918 2.188 sum -0.379 0.762 -12.227 12.257 Atomic orbital electron populations 1.21592 0.96852 0.99095 1.01354 1.22216 0.96051 1.01517 0.99304 1.19326 0.95157 0.88079 0.87868 0.95769 1.21829 1.31159 1.16964 0.90920 0.92734 1.25703 0.95896 0.96571 1.00503 1.70810 1.21406 1.28738 1.34431 0.83585 0.75541 0.75679 0.75740 1.21051 1.21573 1.21573 1.60868 1.03767 1.62381 1.03148 1.22293 0.93899 0.96296 0.90412 0.94866 1.22466 0.96982 1.00587 0.94665 1.22434 0.96584 1.00991 0.95824 1.21662 0.95703 0.98989 0.94856 0.91362 1.21890 1.00953 0.99846 0.97358 1.22362 0.98197 1.00050 0.95206 0.90932 0.94808 0.95354 0.96264 0.91555 0.92095 0.85492 0.90662 0.92321 0.92184 0.92122 0.92795 0.93061 0.93069 0.92592 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.41 16 2 C -0.15 -3.50 5.46 -26.73 -0.15 -3.65 16 3 C 0.20 5.07 1.81 -68.86 -0.12 4.95 16 4 H 0.02 0.67 6.95 -51.93 -0.36 0.31 16 5 C -0.57 -15.78 7.30 -34.44 -0.25 -16.03 16 6 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 7 C 0.02 0.47 5.21 -17.82 -0.09 0.38 16 8 N -0.92 -27.38 13.07 55.43 0.72 -26.65 16 9 Si 1.07 25.33 29.92 -169.99 -5.09 20.24 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.38 6.02 -99.22 -0.60 -14.97 16 14 C 0.08 1.49 2.97 -66.05 -0.20 1.30 16 15 H 0.03 0.65 7.28 -51.93 -0.38 0.27 16 16 C -0.11 -1.91 6.25 -24.74 -0.15 -2.06 16 17 C -0.12 -1.66 6.36 -25.07 -0.16 -1.82 16 18 C -0.09 -1.21 3.50 -89.50 -0.31 -1.52 16 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.14 -1.57 8.84 37.16 0.33 -1.24 16 21 C -0.12 -1.79 5.96 -25.62 -0.15 -1.94 16 22 H 0.07 1.67 6.96 -51.93 -0.36 1.31 16 23 H 0.03 0.64 6.54 -51.93 -0.34 0.30 16 24 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.02 0.41 7.48 -51.93 -0.39 0.02 16 26 H 0.07 1.70 6.33 -51.93 -0.33 1.37 16 27 H 0.27 7.97 5.94 -40.82 -0.24 7.73 16 28 H 0.33 6.68 6.25 -39.29 -0.25 6.43 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.78 7.67 -51.92 -0.40 0.38 16 37 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -28.79 283.54 -8.05 -36.84 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.45 Total: 4.33 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.91 Total: -24.06 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.13 Total: -41.63 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.79 -8.05 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227203141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.422 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds