Wall clock time and date at job start Sun Mar 29 2020 21:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47009 * 177.41406 * 3 2 1 5 5 C 1.50706 * 109.47004 * 57.41741 * 3 2 1 6 6 H 1.07998 * 119.99915 * 244.15874 * 5 3 2 7 7 C 1.37880 * 119.99646 * 64.15768 * 5 3 2 8 8 N 1.31510 * 120.00274 * 9.81711 * 7 5 3 9 9 Si 1.86800 * 119.99660 * 189.81359 * 7 5 3 10 10 H 1.48497 * 109.46982 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47330 * 300.00443 * 9 7 5 12 12 H 1.48502 * 109.46909 * 60.00570 * 9 7 5 13 13 N 1.46894 * 109.47379 * 297.41839 * 3 2 1 14 14 C 1.46902 * 111.00226 * 273.82689 * 13 3 2 15 15 H 1.08999 * 110.43417 * 39.15929 * 14 13 3 16 16 C 1.54890 * 110.48148 * 276.62218 * 14 13 3 17 17 C 1.54893 * 102.74610 * 203.37691 * 16 14 13 18 18 C 1.54262 * 104.19473 * 37.94284 * 17 16 14 19 19 H 1.08999 * 110.03341 * 95.67584 * 18 17 16 20 20 C 1.53006 * 110.03053 * 217.05575 * 18 17 16 21 21 C 1.53869 * 106.60076 * 336.39075 * 18 17 16 22 22 H 1.08997 * 109.47170 * 304.99601 * 1 2 3 23 23 H 1.08998 * 109.46870 * 65.00161 * 1 2 3 24 24 H 1.09010 * 109.46791 * 184.99586 * 1 2 3 25 25 H 1.08998 * 109.47576 * 240.00005 * 2 1 3 26 26 H 1.08999 * 109.47673 * 120.00267 * 2 1 3 27 27 H 0.96999 * 120.00326 * 357.08669 * 8 7 5 28 28 H 1.00904 * 110.99723 * 37.77615 * 13 3 2 29 29 H 1.08999 * 110.75859 * 321.69210 * 16 14 13 30 30 H 1.09004 * 110.75771 * 85.06590 * 16 14 13 31 31 H 1.09004 * 110.48303 * 156.62021 * 17 16 14 32 32 H 1.08996 * 110.48611 * 279.12720 * 17 16 14 33 33 H 1.09001 * 109.46942 * 58.54643 * 20 18 17 34 34 H 1.08994 * 109.46943 * 178.54967 * 20 18 17 35 35 H 1.09003 * 109.46669 * 298.54349 * 20 18 17 36 36 H 1.09009 * 110.03146 * 240.71560 * 21 18 17 37 37 H 1.08994 * 110.03842 * 119.28532 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 0.0464 5 6 1.4860 2.1712 1.1973 6 1 0.8159 3.0067 1.0584 7 6 1.8347 1.7711 2.4698 8 7 2.7929 0.8869 2.6417 9 14 0.9461 2.4850 3.9497 10 1 1.5036 1.8957 5.1935 11 1 1.1296 3.9584 3.9739 12 1 -0.5017 2.1679 3.8581 13 7 1.6020 2.1168 -1.2293 14 6 2.5481 1.8769 -2.3272 15 1 2.9106 0.8493 -2.2994 16 6 3.7326 2.8719 -2.2489 17 6 4.2494 2.9034 -3.7088 18 6 2.9682 2.8352 -4.5652 19 1 2.6585 3.8395 -4.8544 20 6 3.2161 1.9841 -5.8122 21 6 1.8865 2.1826 -3.6868 22 1 -0.3633 0.5894 0.8418 23 1 -0.3633 0.4343 -0.9314 24 1 -0.3633 -1.0239 0.0895 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 3.2255 0.4847 1.8724 28 1 0.6694 1.8298 -1.4865 29 1 3.3884 3.8587 -1.9396 30 1 4.5043 2.5016 -1.5739 31 1 4.7889 3.8306 -3.9024 32 1 4.8887 2.0429 -3.9058 33 1 3.5261 0.9829 -5.5130 34 1 2.2985 1.9208 -6.3971 35 1 4.0002 2.4424 -6.4149 36 1 1.5378 1.2587 -4.1485 37 1 1.0518 2.8700 -3.5496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227203141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:30 Heat of formation + Delta-G solvation = -48.352789 kcal Electronic energy + Delta-G solvation = -14735.274431 eV Core-core repulsion = 12510.290682 eV Total energy + Delta-G solvation = -2224.983749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93049 -37.72058 -34.34177 -32.59898 -30.84111 -29.14811 -27.12508 -25.45347 -25.24675 -21.97491 -20.80605 -20.52867 -18.74265 -17.06104 -16.31664 -15.84108 -15.61807 -15.34533 -14.98140 -14.34836 -14.28110 -14.21310 -13.68520 -13.16219 -13.01503 -12.61637 -12.36440 -12.27937 -12.10002 -11.95009 -11.86453 -11.72176 -11.63993 -11.56393 -11.37378 -11.32834 -10.68017 -10.29420 -9.01720 -8.51459 -6.19464 1.55052 1.62327 1.81361 2.60598 3.25580 3.50811 3.64593 3.76365 4.02945 4.30813 4.33751 4.38930 4.47550 4.52522 4.57112 4.62642 4.72716 4.79247 4.89713 4.94810 4.99893 5.05118 5.14480 5.17179 5.19911 5.31764 5.32784 5.35267 5.46105 5.53453 5.57088 6.04785 6.22962 6.58197 6.82496 6.83821 7.56729 8.84727 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046471 B = 0.007678 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.384184 B = 3645.766006 C = 3868.899112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C 0.210 3.790 4 H -0.012 1.012 5 C -0.576 4.576 6 H 0.044 0.956 7 C -0.030 4.030 8 N -0.941 5.941 9 Si 1.109 2.891 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.676 5.676 14 C 0.076 3.924 15 H 0.021 0.979 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.079 0.921 20 C -0.139 4.139 21 C -0.112 4.112 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.256 0.744 28 H 0.333 0.667 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 1.585 -13.868 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C 0.101 3.899 4 H 0.006 0.994 5 C -0.614 4.614 6 H 0.063 0.937 7 C -0.228 4.228 8 N -0.579 5.579 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.195 1.195 13 N -0.307 5.307 14 C -0.034 4.034 15 H 0.038 0.962 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.108 4.108 19 H 0.097 0.903 20 C -0.196 4.196 21 C -0.150 4.150 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.152 0.848 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.282 2.184 -12.061 12.324 hybrid contribution 0.226 -1.147 -1.421 1.840 sum -1.056 1.037 -13.483 13.564 Atomic orbital electron populations 1.21498 0.94745 1.00357 1.01504 1.22073 0.97824 0.99932 0.98523 1.19071 0.92810 0.89239 0.88802 0.99443 1.22087 1.30488 1.16638 0.92206 0.93726 1.27019 0.95802 0.96350 1.03613 1.70924 1.22867 1.30260 1.33886 0.83023 0.75508 0.75671 0.72577 1.21376 1.20234 1.19481 1.60768 1.04745 1.62032 1.03138 1.22413 0.93863 0.95776 0.91359 0.96150 1.22444 0.96306 0.99237 0.97081 1.22400 0.97388 1.02230 0.92892 1.21659 0.94116 0.99883 0.95130 0.90286 1.21854 1.02129 0.99214 0.96443 1.22317 0.98542 1.00905 0.93242 0.93238 0.92569 0.93075 0.94764 0.94527 0.93412 0.84785 0.92255 0.94767 0.90529 0.91423 0.93167 0.91870 0.91577 0.91233 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.39 71.98 0.68 -4.36 16 2 C -0.14 -6.72 5.46 30.59 0.17 -6.55 16 3 C 0.21 10.69 1.81 44.17 0.08 10.77 16 4 H -0.01 -0.71 6.95 -2.39 -0.02 -0.73 16 5 C -0.58 -32.42 7.30 25.60 0.19 -32.24 16 6 H 0.04 2.56 7.83 -2.91 -0.02 2.53 16 7 C -0.03 -1.73 5.21 84.66 0.44 -1.29 16 8 N -0.94 -57.76 13.07 21.45 0.28 -57.48 16 9 Si 1.11 51.07 29.92 68.60 2.05 53.12 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 N -0.68 -29.03 6.02 -467.81 -2.82 -31.84 16 14 C 0.08 2.76 2.97 45.99 0.14 2.90 16 15 H 0.02 0.80 7.28 -2.39 -0.02 0.78 16 16 C -0.11 -3.98 6.25 31.89 0.20 -3.78 16 17 C -0.11 -2.88 6.36 31.67 0.20 -2.68 16 18 C -0.09 -2.05 3.50 -10.07 -0.04 -2.09 16 19 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 20 C -0.14 -2.55 8.84 71.98 0.64 -1.92 16 21 C -0.11 -3.10 5.96 31.32 0.19 -2.92 16 22 H 0.05 2.24 6.96 -2.39 -0.02 2.22 16 23 H 0.06 2.01 6.54 -2.39 -0.02 1.99 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.03 1.46 7.48 -2.39 -0.02 1.44 16 26 H 0.04 1.91 6.33 -2.39 -0.02 1.90 16 27 H 0.26 15.91 5.94 -92.71 -0.55 15.36 16 28 H 0.33 13.29 6.25 -89.69 -0.56 12.73 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 1.66 7.86 -2.39 -0.02 1.64 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.74 7.67 -2.38 -0.02 1.72 16 37 H 0.07 1.93 8.02 -2.39 -0.02 1.91 16 Total: -1.00 -62.96 283.54 3.07 -59.89 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.68 Total: 20.45 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 2.88 Total: -44.15 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -2.53 Total: -89.32 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -62.96 3.07 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227203141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.542 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds