Wall clock time and date at job start Sun Mar 29 2020 21:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47490 * 2 1 4 4 H 1.08999 * 109.46905 * 305.65343 * 3 2 1 5 5 C 1.50693 * 109.47307 * 185.65043 * 3 2 1 6 6 H 1.08005 * 120.00104 * 239.99930 * 5 3 2 7 7 C 1.37882 * 120.00240 * 60.00120 * 5 3 2 8 8 N 1.31520 * 119.99596 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47136 * 90.00256 * 9 7 5 11 11 H 1.48497 * 109.46955 * 209.99863 * 9 7 5 12 12 H 1.48493 * 109.47346 * 330.00130 * 9 7 5 13 13 N 1.46900 * 109.46670 * 65.64745 * 3 2 1 14 14 C 1.46906 * 110.99900 * 205.21575 * 13 3 2 15 15 H 1.09001 * 110.43321 * 323.09449 * 14 13 3 16 16 C 1.54264 * 110.48287 * 85.63926 * 14 13 3 17 17 C 1.53868 * 106.59884 * 142.42488 * 16 14 13 18 18 C 1.54272 * 106.59844 * 359.97438 * 17 16 14 19 19 H 1.08994 * 110.48048 * 95.20535 * 18 17 16 20 20 C 1.52998 * 110.48680 * 217.71506 * 18 17 16 21 21 C 1.54888 * 104.31108 * 336.46164 * 18 17 16 22 22 H 1.09005 * 109.47556 * 294.59052 * 1 2 3 23 23 H 1.09007 * 109.47291 * 54.59201 * 1 2 3 24 24 H 1.09001 * 109.47502 * 174.58838 * 1 2 3 25 25 H 1.09002 * 109.47117 * 239.99777 * 2 1 3 26 26 H 1.08999 * 109.46730 * 120.00440 * 2 1 3 27 27 H 0.96996 * 119.99858 * 179.97438 * 8 7 5 28 28 H 1.00900 * 111.00280 * 329.17109 * 13 3 2 29 29 H 1.08999 * 110.03455 * 23.13155 * 16 14 13 30 30 H 1.09006 * 110.03028 * 261.70472 * 16 14 13 31 31 H 1.09006 * 110.03272 * 240.71243 * 17 16 14 32 32 H 1.08996 * 110.08020 * 119.30468 * 17 16 14 33 33 H 1.09000 * 109.47320 * 56.75503 * 20 18 17 34 34 H 1.09002 * 109.47194 * 296.76116 * 20 18 17 35 35 H 1.08995 * 109.47098 * 176.75941 * 20 18 17 36 36 H 1.08998 * 110.75449 * 156.18906 * 21 18 17 37 37 H 1.09002 * 110.75284 * 279.56023 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1399 6 1 4.1541 1.8864 0.6314 7 6 4.1300 0.8830 -1.2526 8 7 3.3828 0.3448 -2.1916 9 14 5.9899 0.8864 -1.4263 10 1 6.5464 -0.3474 -0.8153 11 1 6.3525 0.9330 -2.8655 12 1 6.5493 2.0763 -0.7361 13 7 1.6648 2.0944 1.2618 14 6 1.5793 3.5516 1.0963 15 1 2.3549 3.9036 0.4162 16 6 0.1833 3.9551 0.5785 17 6 -0.1834 5.2724 1.2840 18 6 1.0023 5.6232 2.2065 19 1 1.6838 6.3115 1.7066 20 6 0.4993 6.2282 3.5186 21 6 1.6990 4.2648 2.4678 22 1 -0.3634 0.4277 0.9345 23 1 -0.3634 0.5955 -0.8376 24 1 -0.3634 -1.0231 -0.0969 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.7975 -0.0500 -2.9745 28 1 0.7988 1.7196 1.6189 29 1 -0.5448 3.1830 0.8273 30 1 0.2145 4.1056 -0.5007 31 1 -1.0895 5.1397 1.8753 32 1 -0.3307 6.0627 0.5479 33 1 -0.1897 5.5332 3.9986 34 1 -0.0161 7.1663 3.3121 35 1 1.3451 6.4163 4.1798 36 1 2.7445 4.4126 2.7385 37 1 1.1741 3.7040 3.2411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227203153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:32 Heat of formation + Delta-G solvation = -46.340177 kcal Electronic energy + Delta-G solvation = -14679.055113 eV Core-core repulsion = 12454.158637 eV Total energy + Delta-G solvation = -2224.896476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78526 -37.26672 -34.24796 -32.84277 -30.77480 -29.15331 -27.84895 -25.29669 -24.36817 -21.57936 -21.13972 -20.49554 -18.25304 -17.09429 -16.60329 -16.17281 -15.63669 -14.83198 -14.66629 -14.32085 -14.02945 -13.84343 -13.52210 -13.16889 -13.01106 -12.83517 -12.61454 -12.50576 -12.22869 -11.95732 -11.77737 -11.60815 -11.52270 -11.47388 -11.33093 -11.03830 -10.96315 -10.42928 -8.88912 -8.06620 -6.18916 1.40020 1.40586 1.51172 2.43388 3.17664 3.56168 3.80909 3.86145 4.15736 4.40670 4.48358 4.54961 4.57161 4.64065 4.70890 4.74774 4.78109 4.85852 4.96505 5.08678 5.09617 5.17244 5.20821 5.24763 5.34604 5.39592 5.40587 5.46511 5.63259 5.63641 5.77493 5.91824 6.38675 6.58183 6.96232 7.07097 7.50459 8.96205 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.008775 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.077831 B = 3190.076702 C = 3749.357944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.513 4.513 6 H 0.047 0.953 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.086 3.914 15 H 0.046 0.954 16 C -0.148 4.148 17 C -0.107 4.107 18 C -0.096 4.096 19 H 0.068 0.932 20 C -0.135 4.135 21 C -0.099 4.099 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 8.000 7.802 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.552 4.552 6 H 0.065 0.935 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.313 5.313 14 C -0.025 4.025 15 H 0.064 0.936 16 C -0.188 4.188 17 C -0.145 4.145 18 C -0.115 4.115 19 H 0.087 0.913 20 C -0.193 4.193 21 C -0.137 4.137 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.411 7.909 7.867 12.867 hybrid contribution 0.350 -0.238 -1.191 1.264 sum -6.061 7.672 6.676 11.839 Atomic orbital electron populations 1.21737 0.96228 1.01068 1.00434 1.21602 0.94292 0.99128 1.01079 1.18882 0.93728 0.90509 0.84995 1.01426 1.21515 0.93091 1.36459 1.04090 0.93510 1.25692 1.02318 0.95376 0.95576 1.70006 1.36190 1.40007 1.09880 0.85603 0.80801 0.78476 0.77022 1.20092 1.20834 1.19770 1.60628 1.36834 1.03237 1.30571 1.22367 0.95016 0.88326 0.96781 0.93564 1.22825 0.97674 0.98894 0.99391 1.22107 0.98469 0.95691 0.98264 1.21953 0.96673 0.95979 0.96933 0.91332 1.21739 1.01111 1.00797 0.95605 1.22494 1.00011 0.95217 0.95991 0.92359 0.94600 0.92427 0.91518 0.94601 0.93091 0.85356 0.92027 0.94117 0.90444 0.91550 0.92292 0.91652 0.92410 0.92695 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.65 71.98 0.69 -4.56 16 2 C -0.12 -5.92 5.36 30.59 0.16 -5.76 16 3 C 0.23 11.71 1.89 44.17 0.08 11.80 16 4 H -0.03 -1.83 7.71 -2.39 -0.02 -1.85 16 5 C -0.51 -29.50 8.53 25.60 0.22 -29.29 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -54.14 11.29 21.45 0.24 -53.90 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.68 -29.50 6.14 -467.55 -2.87 -32.37 16 14 C 0.09 3.30 2.94 46.04 0.14 3.44 16 15 H 0.05 2.10 7.74 -2.39 -0.02 2.09 16 16 C -0.15 -4.84 6.28 31.32 0.20 -4.65 16 17 C -0.11 -2.68 6.38 31.32 0.20 -2.48 16 18 C -0.10 -2.39 3.45 -9.72 -0.03 -2.42 16 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.14 -2.57 9.12 71.98 0.66 -1.92 16 21 C -0.10 -3.06 6.03 31.94 0.19 -2.86 16 22 H 0.06 1.94 6.64 -2.38 -0.02 1.93 16 23 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 3.67 5.94 -2.39 -0.01 3.65 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.33 12.68 6.03 -89.69 -0.54 12.14 16 29 H 0.06 1.94 7.59 -2.39 -0.02 1.93 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.66 7.82 -2.38 -0.02 1.65 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 Total: -1.00 -61.27 288.23 2.82 -58.45 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.47 Total: 18.32 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.96 Total: -37.77 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.63 Total: -86.27 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -61.27 2.82 -58.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227203153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.108 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds