Wall clock time and date at job start Sun Mar 29 2020 21:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36889 * 120.00372 * 2 1 4 4 H 1.07993 * 119.99999 * 221.77735 * 3 2 1 5 5 C 1.39011 * 120.00044 * 41.76903 * 3 2 1 6 6 N 1.31395 * 119.99584 * 8.65557 * 5 3 2 7 7 Si 1.86794 * 120.00043 * 188.65562 * 5 3 2 8 8 H 1.48497 * 109.47449 * 90.00177 * 7 5 3 9 9 H 1.48506 * 109.47187 * 210.00282 * 7 5 3 10 10 H 1.48500 * 109.47290 * 329.99958 * 7 5 3 11 11 C 1.34780 * 119.99841 * 179.97438 * 2 1 3 12 12 O 1.21726 * 120.00172 * 5.80404 * 11 2 1 13 13 C 1.46568 * 119.99969 * 185.80366 * 11 2 1 14 14 C 1.36772 * 126.17865 * 186.55522 * 13 11 2 15 15 N 1.30941 * 113.92415 * 179.97438 * 14 13 11 16 16 C 1.29381 * 117.46484 * 359.97438 * 15 14 13 17 17 S 1.70922 * 110.59438 * 0.02562 * 16 15 14 18 18 H 1.08994 * 109.47259 * 266.55956 * 1 2 3 19 19 H 1.09001 * 109.46757 * 26.56122 * 1 2 3 20 20 H 1.09005 * 109.47066 * 146.55651 * 1 2 3 21 21 H 0.96999 * 119.99794 * 179.97438 * 6 5 3 22 22 H 1.08003 * 123.04216 * 359.97438 * 14 13 11 23 23 H 1.07993 * 124.70161 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.0235 1.3043 -0.6231 5 6 1.7195 2.2364 0.8019 6 7 0.7646 2.0420 1.6833 7 14 2.4992 3.9247 0.6265 8 1 1.7482 4.7145 -0.3821 9 1 2.4595 4.6267 1.9346 10 1 3.9100 3.7753 0.1877 11 6 2.1389 -1.1672 0.0005 12 8 1.5349 -2.2188 -0.1056 13 6 3.5989 -1.1705 0.1289 14 6 4.4166 -2.2613 0.0192 15 7 5.6879 -1.9899 0.1762 16 6 6.0110 -0.7589 0.4089 17 16 4.6179 0.2306 0.4512 18 1 -0.3633 -0.0617 1.0257 19 1 -0.3633 0.9192 -0.4595 20 1 -0.3633 -0.8576 -0.5664 21 1 0.4648 2.7752 2.2432 22 1 4.0472 -3.2567 -0.1789 23 1 7.0208 -0.4055 0.5560 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227422268.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:54 Heat of formation + Delta-G solvation = 11.056098 kcal Electronic energy + Delta-G solvation = -11974.430594 eV Core-core repulsion = 9721.850684 eV Total energy + Delta-G solvation = -2252.579910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.01567 -37.99781 -34.91054 -31.81352 -29.83373 -26.69321 -25.55142 -24.07346 -20.53601 -19.16611 -18.18169 -16.78361 -15.65556 -14.94872 -14.56769 -14.24801 -13.69824 -13.28388 -13.15957 -12.70052 -11.88291 -11.50086 -11.45311 -11.16280 -10.95969 -10.61800 -10.47232 -9.55209 -8.89382 -8.69985 -8.54113 -8.21560 -7.67314 -6.69962 -4.46200 1.15208 2.22075 2.66189 2.96873 3.03929 3.06015 3.35306 3.83209 4.22624 4.64318 4.78703 5.04757 5.88364 6.05659 6.21113 6.60861 6.72743 6.88201 7.01747 7.10000 7.61401 8.02987 8.40665 8.71693 9.20774 9.65191 10.30248 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.015666 C = 0.010896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.262002 B = 1786.893169 C = 2569.205005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.434 5.434 3 C -0.346 4.346 4 H 0.101 0.899 5 C 0.060 3.940 6 N -0.840 5.840 7 Si 0.912 3.088 8 H -0.270 1.270 9 H -0.276 1.276 10 H -0.257 1.257 11 C 0.535 3.465 12 O -0.596 6.596 13 C -0.242 4.242 14 C 0.061 3.939 15 N -0.488 5.488 16 C -0.083 4.083 17 S 0.255 5.745 18 H 0.057 0.943 19 H 0.059 0.941 20 H 0.043 0.957 21 H 0.278 0.722 22 H 0.173 0.827 23 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 3.038 -1.185 5.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.151 5.151 3 C -0.480 4.480 4 H 0.118 0.882 5 C -0.152 4.152 6 N -0.472 5.472 7 Si 0.737 3.263 8 H -0.195 1.195 9 H -0.201 1.201 10 H -0.181 1.181 11 C 0.323 3.677 12 O -0.484 6.484 13 C -0.367 4.367 14 C -0.097 4.097 15 N -0.202 5.202 16 C -0.375 4.375 17 S 0.515 5.485 18 H 0.076 0.924 19 H 0.078 0.922 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.190 0.810 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.670 3.347 -0.910 5.818 hybrid contribution 0.046 0.102 -0.058 0.126 sum 4.717 3.449 -0.968 5.923 Atomic orbital electron populations 1.21353 0.80473 0.99674 1.01310 1.43263 1.05649 1.04234 1.61958 1.19501 1.12557 0.90195 1.25704 0.88205 1.25629 0.95830 1.00602 0.93127 1.69902 1.25950 1.33409 1.17937 0.86114 0.80548 0.81129 0.78543 1.19511 1.20086 1.18053 1.17078 0.84343 0.84298 0.81943 1.90670 1.68833 1.31543 1.57325 1.26124 0.99725 0.96857 1.13977 1.22215 0.86513 0.99613 1.01408 1.66201 1.18544 1.20007 1.15448 1.29313 1.07409 0.95432 1.05373 1.85054 0.93884 1.09218 1.60298 0.92423 0.92237 0.93791 0.91156 0.80991 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.69 8.87 59.85 0.53 3.23 14 2 N -0.43 -10.89 2.91 -123.73 -0.36 -11.25 14 3 C -0.35 -8.26 6.82 -15.01 -0.10 -8.36 14 4 H 0.10 2.29 5.62 -37.17 -0.21 2.08 14 5 C 0.06 1.40 5.19 -17.45 -0.09 1.31 14 6 N -0.84 -20.61 11.81 55.50 0.66 -19.95 14 7 Si 0.91 17.59 29.56 -169.99 -5.03 12.57 14 8 H -0.27 -5.18 7.11 56.52 0.40 -4.77 14 9 H -0.28 -5.31 7.11 56.52 0.40 -4.91 14 10 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 11 C 0.53 13.64 7.59 -12.90 -0.10 13.54 14 12 O -0.60 -16.30 16.49 5.17 0.09 -16.22 14 13 C -0.24 -5.48 6.31 -36.76 -0.23 -5.71 14 14 C 0.06 1.29 11.17 -18.46 -0.21 1.08 14 15 N -0.49 -9.72 10.50 -15.13 -0.16 -9.88 14 16 C -0.08 -1.46 12.21 51.73 0.63 -0.83 14 17 S 0.26 4.93 18.75 -107.50 -2.02 2.92 14 18 H 0.06 1.40 7.63 -51.93 -0.40 1.00 14 19 H 0.06 1.33 7.88 -51.93 -0.41 0.92 14 20 H 0.04 0.99 7.45 -51.93 -0.39 0.60 14 21 H 0.28 6.36 8.31 -40.82 -0.34 6.03 14 22 H 0.17 3.45 8.06 -52.48 -0.42 3.02 14 23 H 0.18 2.43 8.06 -52.49 -0.42 2.00 14 LS Contribution 222.49 15.07 3.35 3.35 Total: -1.00 -28.11 222.49 -4.41 -32.52 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -1.38 Total: 1.69 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.43 Total: 4.25 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.14 Total: -41.08 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.02 Total: 2.92 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.11 -4.41 -32.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422268.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.577 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds