Wall clock time and date at job start Sun Mar 29 2020 21:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36889 * 120.00372 * 2 1 4 4 H 1.07993 * 119.99999 * 221.77735 * 3 2 1 5 5 C 1.39011 * 120.00044 * 41.76903 * 3 2 1 6 6 N 1.31395 * 119.99584 * 8.65557 * 5 3 2 7 7 Si 1.86794 * 120.00043 * 188.65562 * 5 3 2 8 8 H 1.48497 * 109.47449 * 90.00177 * 7 5 3 9 9 H 1.48506 * 109.47187 * 210.00282 * 7 5 3 10 10 H 1.48500 * 109.47290 * 329.99958 * 7 5 3 11 11 C 1.34780 * 119.99841 * 179.97438 * 2 1 3 12 12 O 1.21726 * 120.00172 * 5.80404 * 11 2 1 13 13 C 1.46568 * 119.99969 * 185.80366 * 11 2 1 14 14 C 1.36772 * 126.17865 * 186.55522 * 13 11 2 15 15 N 1.30941 * 113.92415 * 179.97438 * 14 13 11 16 16 C 1.29381 * 117.46484 * 359.97438 * 15 14 13 17 17 S 1.70922 * 110.59438 * 0.02562 * 16 15 14 18 18 H 1.08994 * 109.47259 * 266.55956 * 1 2 3 19 19 H 1.09001 * 109.46757 * 26.56122 * 1 2 3 20 20 H 1.09005 * 109.47066 * 146.55651 * 1 2 3 21 21 H 0.96999 * 119.99794 * 179.97438 * 6 5 3 22 22 H 1.08003 * 123.04216 * 359.97438 * 14 13 11 23 23 H 1.07993 * 124.70161 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.0235 1.3043 -0.6231 5 6 1.7195 2.2364 0.8019 6 7 0.7646 2.0420 1.6833 7 14 2.4992 3.9247 0.6265 8 1 1.7482 4.7145 -0.3821 9 1 2.4595 4.6267 1.9346 10 1 3.9100 3.7753 0.1877 11 6 2.1389 -1.1672 0.0005 12 8 1.5349 -2.2188 -0.1056 13 6 3.5989 -1.1705 0.1289 14 6 4.4166 -2.2613 0.0192 15 7 5.6879 -1.9899 0.1762 16 6 6.0110 -0.7589 0.4089 17 16 4.6179 0.2306 0.4512 18 1 -0.3633 -0.0617 1.0257 19 1 -0.3633 0.9192 -0.4595 20 1 -0.3633 -0.8576 -0.5664 21 1 0.4648 2.7752 2.2432 22 1 4.0472 -3.2567 -0.1789 23 1 7.0208 -0.4055 0.5560 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227422268.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:54 Heat of formation + Delta-G solvation = -7.820486 kcal Electronic energy + Delta-G solvation = -11975.249144 eV Core-core repulsion = 9721.850684 eV Total energy + Delta-G solvation = -2253.398460 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76706 -39.74250 -36.80745 -33.65344 -31.51788 -28.50030 -27.29221 -25.78342 -22.30043 -20.88327 -19.85248 -18.54372 -17.37911 -16.78527 -16.27511 -16.04088 -15.36240 -14.94619 -14.66494 -14.41803 -13.73815 -13.27484 -13.19686 -12.86324 -12.70567 -12.22024 -11.99634 -11.29988 -10.74966 -10.36311 -10.18042 -9.85564 -9.48165 -8.46373 -6.32028 -0.44542 0.63856 1.10943 1.45549 1.48628 1.60329 1.72373 2.22203 2.41894 2.85133 2.99904 3.58895 4.27731 4.45287 4.55906 4.76076 4.82597 5.13503 5.24696 5.29599 5.77941 6.20434 6.83634 6.90527 7.32673 7.77874 8.56262 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.015666 C = 0.010896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.262002 B = 1786.893169 C = 2569.205005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.444 5.444 3 C -0.366 4.366 4 H 0.110 0.890 5 C 0.026 3.974 6 N -0.875 5.875 7 Si 0.971 3.029 8 H -0.267 1.267 9 H -0.275 1.275 10 H -0.236 1.236 11 C 0.521 3.479 12 O -0.631 6.631 13 C -0.289 4.289 14 C 0.072 3.928 15 N -0.504 5.504 16 C -0.048 4.048 17 S 0.278 5.722 18 H 0.042 0.958 19 H 0.064 0.936 20 H 0.045 0.955 21 H 0.281 0.719 22 H 0.174 0.826 23 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 4.406 -1.268 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.160 5.160 3 C -0.498 4.498 4 H 0.127 0.873 5 C -0.183 4.183 6 N -0.509 5.509 7 Si 0.791 3.209 8 H -0.193 1.193 9 H -0.200 1.200 10 H -0.158 1.158 11 C 0.311 3.689 12 O -0.522 6.522 13 C -0.414 4.414 14 C -0.087 4.087 15 N -0.218 5.218 16 C -0.340 4.340 17 S 0.538 5.462 18 H 0.061 0.939 19 H 0.083 0.917 20 H 0.064 0.936 21 H 0.091 0.909 22 H 0.191 0.809 23 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.007 4.737 -1.002 8.517 hybrid contribution -0.572 -0.370 -0.024 0.681 sum 6.435 4.367 -1.026 7.844 Atomic orbital electron populations 1.21245 0.80473 0.99908 1.00389 1.43514 1.06079 1.04801 1.61654 1.19828 1.13462 0.89966 1.26550 0.87277 1.26444 0.95888 1.03739 0.92236 1.69998 1.27323 1.34661 1.18875 0.85236 0.80793 0.76393 0.78460 1.19255 1.20036 1.15836 1.17522 0.85780 0.83955 0.81660 1.90615 1.70040 1.32534 1.58972 1.25947 0.98875 0.99243 1.17297 1.22353 0.86979 0.99519 0.99896 1.66308 1.17518 1.21028 1.16958 1.29990 1.08751 0.93946 1.01344 1.84743 0.93484 1.08018 1.59961 0.93900 0.91731 0.93629 0.90864 0.80918 0.75403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.93 8.87 127.77 1.13 7.06 14 2 N -0.44 -22.60 2.91 -663.57 -1.93 -24.53 14 3 C -0.37 -17.29 6.82 84.09 0.57 -16.72 14 4 H 0.11 4.84 5.62 -12.65 -0.07 4.77 14 5 C 0.03 1.16 5.19 84.94 0.44 1.60 14 6 N -0.88 -43.04 11.81 21.68 0.26 -42.78 14 7 Si 0.97 34.36 29.56 68.60 2.03 36.38 14 8 H -0.27 -9.35 7.11 99.48 0.71 -8.64 14 9 H -0.28 -9.68 7.11 99.48 0.71 -8.97 14 10 H -0.24 -7.48 7.11 99.48 0.71 -6.77 14 11 C 0.52 27.04 7.59 86.41 0.66 27.69 14 12 O -0.63 -35.58 16.49 -4.43 -0.07 -35.65 14 13 C -0.29 -12.94 6.31 24.10 0.15 -12.78 14 14 C 0.07 2.97 11.17 84.48 0.94 3.91 14 15 N -0.50 -18.60 10.50 -201.77 -2.12 -20.72 14 16 C -0.05 -1.48 12.21 130.60 1.59 0.11 14 17 S 0.28 9.99 18.75 -56.49 -1.06 8.93 14 18 H 0.04 2.16 7.63 -2.39 -0.02 2.14 14 19 H 0.06 2.96 7.88 -2.39 -0.02 2.94 14 20 H 0.05 2.12 7.45 -2.38 -0.02 2.10 14 21 H 0.28 12.88 8.31 -92.71 -0.77 12.11 14 22 H 0.17 6.91 8.06 -2.91 -0.02 6.89 14 23 H 0.23 4.70 8.06 -2.91 -0.02 4.68 14 Total: -1.00 -60.03 222.49 3.78 -56.26 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.18 Total: 11.24 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.49 Total: 10.87 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -3.79 Total: -88.02 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.07 Total: -35.65 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.38 kcal Atomic # 16 Polarization: 9.99 SS G_CDS: -1.06 Total: 8.93 kcal Total: -60.03 3.78 -56.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422268.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.438 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds