Wall clock time and date at job start Sun Mar 29 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09000 * 109.46938 * 55.09731 * 3 2 1 5 5 C 1.50691 * 109.47000 * 175.10384 * 3 2 1 6 6 H 1.08002 * 120.00698 * 119.99996 * 5 3 2 7 7 C 1.37886 * 120.00070 * 299.99841 * 5 3 2 8 8 N 1.31512 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00039 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47270 * 89.99715 * 9 7 5 11 11 H 1.48500 * 109.46687 * 210.00179 * 9 7 5 12 12 H 1.48499 * 109.46977 * 329.99243 * 9 7 5 13 13 N 1.46901 * 109.46943 * 295.10160 * 3 2 1 14 14 C 1.46897 * 110.99893 * 154.21577 * 13 3 2 15 15 C 1.53003 * 109.46993 * 185.19906 * 14 13 3 16 16 C 1.53003 * 109.47095 * 180.02562 * 15 14 13 17 17 C 1.53783 * 113.61251 * 274.13984 * 16 15 14 18 18 C 1.53956 * 87.01833 * 220.04685 * 17 16 15 19 19 C 1.53780 * 113.61333 * 176.53099 * 16 15 14 20 20 H 1.09004 * 109.47151 * 300.44809 * 1 2 3 21 21 H 1.08998 * 109.47398 * 60.44640 * 1 2 3 22 22 H 1.09001 * 109.47279 * 180.45523 * 1 2 3 23 23 H 1.08999 * 109.46419 * 239.99820 * 2 1 3 24 24 H 1.08998 * 109.46916 * 120.00412 * 2 1 3 25 25 H 0.97003 * 119.99770 * 180.02562 * 8 7 5 26 26 H 1.00901 * 110.99828 * 278.17403 * 13 3 2 27 27 H 1.09002 * 109.46942 * 65.20293 * 14 13 3 28 28 H 1.08998 * 109.46920 * 305.20081 * 14 13 3 29 29 H 1.08993 * 109.47558 * 300.00313 * 15 14 13 30 30 H 1.09002 * 109.46960 * 60.00399 * 15 14 13 31 31 H 1.09000 * 112.84865 * 45.33087 * 16 15 14 32 32 H 1.09000 * 113.61669 * 334.56948 * 17 16 15 33 33 H 1.08998 * 113.61322 * 105.47011 * 17 16 15 34 34 H 1.09000 * 113.53752 * 270.81142 * 18 17 16 35 35 H 1.08996 * 113.66805 * 139.93488 * 18 17 16 36 36 H 1.08997 * 113.61522 * 254.52997 * 19 16 15 37 37 H 1.09001 * 113.61113 * 25.35370 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8428 5 6 3.5421 1.4441 0.1213 6 1 4.1462 1.8891 -0.6556 7 6 4.1453 0.8775 1.2241 8 7 3.4099 0.3352 2.1699 9 14 6.0073 0.8802 1.3748 10 1 6.4452 2.1127 2.0778 11 1 6.4431 -0.3113 2.1464 12 1 6.6135 0.8412 0.0197 13 7 1.6493 2.1000 -1.2542 14 6 1.5527 3.5551 -1.0779 15 6 1.0202 4.1904 -2.3639 16 6 0.9202 5.7061 -2.1804 17 6 -0.4002 6.1631 -1.5381 18 6 -0.3819 7.3406 -2.5298 19 6 0.4731 6.4519 -3.4487 20 1 -0.3634 0.5208 0.8860 21 1 -0.3634 0.5069 -0.8939 22 1 -0.3634 -1.0276 0.0082 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8343 -0.0630 2.9459 26 1 2.2893 1.8676 -1.9989 27 1 2.5396 3.9603 -0.8541 28 1 0.8736 3.7770 -0.2547 29 1 1.6992 3.9685 -3.1870 30 1 0.0333 3.7853 -2.5876 31 1 1.8055 6.1350 -1.7109 32 1 -1.2264 5.4703 -1.6981 33 1 -0.2969 6.4668 -0.4964 34 1 0.1466 8.2171 -2.1550 35 1 -1.3618 7.5803 -2.9425 36 1 1.2803 6.9885 -3.9473 37 1 -0.1127 5.8378 -4.1327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229098246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:08 Heat of formation + Delta-G solvation = -8.371682 kcal Electronic energy + Delta-G solvation = -14203.091576 eV Core-core repulsion = 11979.841538 eV Total energy + Delta-G solvation = -2223.250038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80221 -36.13277 -32.98173 -31.39465 -29.31766 -26.24770 -25.51387 -23.84263 -22.41187 -20.79972 -19.46048 -19.15099 -16.66155 -15.49237 -14.96199 -14.60259 -14.09866 -13.75299 -13.34212 -12.88071 -12.44056 -12.34487 -11.98996 -11.68697 -11.28988 -11.14824 -11.11336 -10.82454 -10.71463 -10.52789 -10.42500 -10.15809 -9.97362 -9.86140 -9.55030 -9.29628 -9.00408 -8.35355 -7.18103 -5.96979 -4.09972 3.27665 3.34832 3.37761 4.41073 4.71755 4.76945 4.85401 4.97182 5.26998 5.44174 5.64720 5.75651 5.83385 5.86478 5.90913 5.99178 6.10218 6.17364 6.31863 6.42674 6.48203 6.55011 6.60505 6.73497 6.75921 6.86723 7.18649 7.21666 7.49079 7.63906 7.80906 8.13610 8.20506 8.38910 8.72827 9.03957 9.57434 11.02935 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.006974 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.104192 B = 4014.146084 C = 4576.281553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.691 5.691 14 C 0.069 3.931 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.138 4.138 20 H 0.035 0.965 21 H 0.048 0.952 22 H 0.024 0.976 23 H 0.030 0.970 24 H 0.089 0.911 25 H 0.261 0.739 26 H 0.325 0.675 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 8.745 -7.321 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.320 5.320 14 C -0.061 4.061 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.174 4.174 18 C -0.182 4.182 19 C -0.175 4.175 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.225 8.534 -7.028 12.688 hybrid contribution 2.095 0.226 0.297 2.129 sum -4.129 8.761 -6.731 11.794 Atomic orbital electron populations 1.21698 0.99054 0.98274 1.00387 1.21494 0.92079 0.99324 1.01577 1.19135 0.92711 0.91210 0.86340 0.95159 1.21884 0.92846 1.38017 1.05562 0.92942 1.24942 0.97904 0.95021 0.95723 1.69882 1.34795 1.38301 1.09427 0.86660 0.86125 0.77516 0.78075 1.20789 1.21137 1.20016 1.60883 1.54882 1.06407 1.09860 1.21727 0.98519 0.89829 0.96043 1.21558 1.01450 0.92811 0.98435 1.22527 0.97698 0.95920 0.96584 1.22990 0.98156 0.97612 0.98605 1.22846 0.99942 0.97228 0.98157 1.22936 0.99492 0.98453 0.96663 0.94553 0.93319 0.95708 0.95161 0.89245 0.92914 0.85898 0.95849 0.92395 0.92660 0.91743 0.89596 0.90108 0.91768 0.90613 0.91942 0.92024 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.79 37.16 0.36 -2.53 16 2 C -0.11 -2.60 5.45 -26.73 -0.15 -2.75 16 3 C 0.21 5.41 1.98 -68.87 -0.14 5.27 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.54 -14.91 8.47 -34.44 -0.29 -15.20 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.03 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.69 -14.83 5.68 -107.95 -0.61 -15.45 16 14 C 0.07 1.32 5.51 -3.82 -0.02 1.29 16 15 C -0.10 -1.59 5.34 -26.73 -0.14 -1.73 16 16 C -0.11 -1.42 3.64 -89.81 -0.33 -1.75 16 17 C -0.14 -1.65 7.65 -25.83 -0.20 -1.85 16 18 C -0.14 -1.51 8.09 -25.82 -0.21 -1.72 16 19 C -0.14 -1.54 7.65 -25.92 -0.20 -1.73 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.99 7.76 -51.93 -0.40 0.58 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.33 6.91 8.46 -39.29 -0.33 6.58 16 27 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -27.59 295.78 -8.81 -36.40 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.86 Total: 3.92 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.40 Total: -20.94 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.01 Total: -40.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.59 -8.81 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229098246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds