Wall clock time and date at job start Sun Mar 29 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09000 * 109.46938 * 55.09731 * 3 2 1 5 5 C 1.50691 * 109.47000 * 175.10384 * 3 2 1 6 6 H 1.08002 * 120.00698 * 119.99996 * 5 3 2 7 7 C 1.37886 * 120.00070 * 299.99841 * 5 3 2 8 8 N 1.31512 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00039 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47270 * 89.99715 * 9 7 5 11 11 H 1.48500 * 109.46687 * 210.00179 * 9 7 5 12 12 H 1.48499 * 109.46977 * 329.99243 * 9 7 5 13 13 N 1.46901 * 109.46943 * 295.10160 * 3 2 1 14 14 C 1.46897 * 110.99893 * 154.21577 * 13 3 2 15 15 C 1.53003 * 109.46993 * 185.19906 * 14 13 3 16 16 C 1.53003 * 109.47095 * 180.02562 * 15 14 13 17 17 C 1.53783 * 113.61251 * 274.13984 * 16 15 14 18 18 C 1.53956 * 87.01833 * 220.04685 * 17 16 15 19 19 C 1.53780 * 113.61333 * 176.53099 * 16 15 14 20 20 H 1.09004 * 109.47151 * 300.44809 * 1 2 3 21 21 H 1.08998 * 109.47398 * 60.44640 * 1 2 3 22 22 H 1.09001 * 109.47279 * 180.45523 * 1 2 3 23 23 H 1.08999 * 109.46419 * 239.99820 * 2 1 3 24 24 H 1.08998 * 109.46916 * 120.00412 * 2 1 3 25 25 H 0.97003 * 119.99770 * 180.02562 * 8 7 5 26 26 H 1.00901 * 110.99828 * 278.17403 * 13 3 2 27 27 H 1.09002 * 109.46942 * 65.20293 * 14 13 3 28 28 H 1.08998 * 109.46920 * 305.20081 * 14 13 3 29 29 H 1.08993 * 109.47558 * 300.00313 * 15 14 13 30 30 H 1.09002 * 109.46960 * 60.00399 * 15 14 13 31 31 H 1.09000 * 112.84865 * 45.33087 * 16 15 14 32 32 H 1.09000 * 113.61669 * 334.56948 * 17 16 15 33 33 H 1.08998 * 113.61322 * 105.47011 * 17 16 15 34 34 H 1.09000 * 113.53752 * 270.81142 * 18 17 16 35 35 H 1.08996 * 113.66805 * 139.93488 * 18 17 16 36 36 H 1.08997 * 113.61522 * 254.52997 * 19 16 15 37 37 H 1.09001 * 113.61113 * 25.35370 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8428 5 6 3.5421 1.4441 0.1213 6 1 4.1462 1.8891 -0.6556 7 6 4.1453 0.8775 1.2241 8 7 3.4099 0.3352 2.1699 9 14 6.0073 0.8802 1.3748 10 1 6.4452 2.1127 2.0778 11 1 6.4431 -0.3113 2.1464 12 1 6.6135 0.8412 0.0197 13 7 1.6493 2.1000 -1.2542 14 6 1.5527 3.5551 -1.0779 15 6 1.0202 4.1904 -2.3639 16 6 0.9202 5.7061 -2.1804 17 6 -0.4002 6.1631 -1.5381 18 6 -0.3819 7.3406 -2.5298 19 6 0.4731 6.4519 -3.4487 20 1 -0.3634 0.5208 0.8860 21 1 -0.3634 0.5069 -0.8939 22 1 -0.3634 -1.0276 0.0082 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8343 -0.0630 2.9459 26 1 2.2893 1.8676 -1.9989 27 1 2.5396 3.9603 -0.8541 28 1 0.8736 3.7770 -0.2547 29 1 1.6992 3.9685 -3.1870 30 1 0.0333 3.7853 -2.5876 31 1 1.8055 6.1350 -1.7109 32 1 -1.2264 5.4703 -1.6981 33 1 -0.2969 6.4668 -0.4964 34 1 0.1466 8.2171 -2.1550 35 1 -1.3618 7.5803 -2.9425 36 1 1.2803 6.9885 -3.9473 37 1 -0.1127 5.8378 -4.1327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229098246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:08 Heat of formation + Delta-G solvation = -23.450242 kcal Electronic energy + Delta-G solvation = -14203.745432 eV Core-core repulsion = 11979.841538 eV Total energy + Delta-G solvation = -2223.903893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82269 -37.96178 -34.79061 -33.30315 -30.85709 -28.13114 -26.45039 -25.37772 -24.09715 -22.22405 -21.32826 -20.18484 -18.74111 -16.85354 -16.52501 -16.08321 -15.64480 -15.22035 -14.95137 -14.70635 -13.98215 -13.43693 -13.25167 -13.22847 -13.06813 -12.94984 -12.79731 -12.54316 -12.25290 -12.14643 -11.78792 -11.55070 -11.49639 -11.32912 -11.07384 -10.92029 -10.73060 -10.47715 -9.05032 -8.06603 -6.29543 1.36841 1.38271 1.47913 2.38867 3.12448 3.58731 3.80100 3.85987 4.02907 4.07558 4.42242 4.52647 4.62348 4.75258 4.76356 4.81864 4.92891 4.94384 4.95810 4.99638 5.09699 5.12764 5.17153 5.29927 5.36561 5.41604 5.50126 5.51611 5.63294 5.71094 5.77016 6.10155 6.20148 6.38930 6.82255 7.01735 7.42056 8.89913 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.006974 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.104192 B = 4014.146084 C = 4576.281553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.220 3.780 4 H -0.005 1.005 5 C -0.561 4.561 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.270 1.270 13 N -0.682 5.682 14 C 0.073 3.927 15 C -0.091 4.091 16 C -0.117 4.117 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.130 4.130 20 H 0.028 0.972 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.329 0.671 27 H 0.004 0.996 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 9.457 -8.582 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.600 4.600 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.194 1.194 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.136 4.136 17 C -0.179 4.179 18 C -0.172 4.172 19 C -0.168 4.168 20 H 0.048 0.952 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.336 9.256 -8.303 13.955 hybrid contribution 2.113 0.010 0.708 2.229 sum -4.223 9.266 -7.594 12.703 Atomic orbital electron populations 1.21559 0.96389 0.99776 1.00489 1.21362 0.94457 0.98303 1.00037 1.18936 0.91626 0.91636 0.86739 0.98663 1.22176 0.94078 1.38083 1.05699 0.93311 1.25698 1.02316 0.94690 0.95438 1.70011 1.36500 1.38738 1.09805 0.85655 0.80804 0.77585 0.78181 1.20424 1.20602 1.19427 1.60840 1.54348 1.07702 1.08211 1.21755 0.97424 0.88502 0.98041 1.21433 1.01276 0.94091 0.96045 1.22558 0.98059 0.94387 0.98557 1.23029 0.97468 0.98611 0.98791 1.22817 1.00693 0.96674 0.97016 1.22911 0.99823 0.98184 0.95856 0.95241 0.92330 0.93495 0.95220 0.92124 0.92830 0.85539 0.97751 0.93577 0.92198 0.91392 0.90331 0.90163 0.92361 0.89878 0.90508 0.91111 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.79 71.98 0.70 -4.47 16 2 C -0.10 -5.08 5.45 30.59 0.17 -4.91 16 3 C 0.22 11.31 1.98 44.17 0.09 11.39 16 4 H 0.00 -0.27 7.70 -2.39 -0.02 -0.29 16 5 C -0.56 -31.17 8.47 25.60 0.22 -30.95 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.66 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.99 11.29 21.45 0.24 -52.74 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.68 -29.33 5.68 -495.46 -2.81 -32.14 16 14 C 0.07 2.80 5.51 86.30 0.48 3.27 16 15 C -0.09 -2.66 5.34 30.60 0.16 -2.49 16 16 C -0.12 -2.91 3.64 -10.27 -0.04 -2.95 16 17 C -0.14 -3.24 7.65 31.18 0.24 -3.00 16 18 C -0.13 -2.48 8.09 31.18 0.25 -2.23 16 19 C -0.13 -2.57 7.65 31.12 0.24 -2.34 16 20 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.06 2.29 7.76 -2.39 -0.02 2.27 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 3.36 5.95 -2.39 -0.01 3.34 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.33 13.85 8.46 -89.69 -0.76 13.09 16 27 H 0.00 0.18 8.11 -2.39 -0.02 0.16 16 28 H 0.05 1.86 7.92 -2.39 -0.02 1.84 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.96 7.88 -2.39 -0.02 1.94 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.84 7.92 -2.39 -0.02 1.82 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -58.64 295.78 2.66 -55.98 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.25 Total: 20.15 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 2.95 Total: -37.19 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.57 Total: -84.88 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -58.64 2.66 -55.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229098246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.530 kcal (2) G-P(sol) polarization free energy of solvation -58.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds