Wall clock time and date at job start Sun Mar 29 2020 21:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.09005 * 109.46774 * 174.83840 * 3 2 1 5 5 C 1.50701 * 109.46829 * 54.84500 * 3 2 1 6 6 H 1.08004 * 119.99705 * 239.99484 * 5 3 2 7 7 C 1.37875 * 120.00162 * 60.00057 * 5 3 2 8 8 N 1.31512 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99767 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47380 * 89.99753 * 9 7 5 11 11 H 1.48506 * 109.47234 * 209.99776 * 9 7 5 12 12 H 1.48502 * 109.47266 * 329.99650 * 9 7 5 13 13 N 1.46893 * 109.47283 * 294.84323 * 3 2 1 14 14 C 1.46902 * 111.00012 * 273.82364 * 13 3 2 15 15 C 1.52997 * 109.47288 * 185.18077 * 14 13 3 16 16 C 1.53000 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.53785 * 113.61131 * 274.13790 * 16 15 14 18 18 C 1.53959 * 87.01762 * 220.04452 * 17 16 15 19 19 C 1.53778 * 113.61641 * 176.53185 * 16 15 14 20 20 H 1.08996 * 109.47419 * 298.00850 * 1 2 3 21 21 H 1.09009 * 109.47170 * 58.00567 * 1 2 3 22 22 H 1.08997 * 109.47297 * 178.00625 * 1 2 3 23 23 H 1.08997 * 109.46875 * 240.00025 * 2 1 3 24 24 H 1.09000 * 109.46979 * 120.00164 * 2 1 3 25 25 H 0.97008 * 119.99612 * 180.02562 * 8 7 5 26 26 H 1.00901 * 111.00462 * 37.77694 * 13 3 2 27 27 H 1.08992 * 109.47470 * 305.18441 * 14 13 3 28 28 H 1.09009 * 109.47033 * 65.18016 * 14 13 3 29 29 H 1.09002 * 109.47090 * 300.00028 * 15 14 13 30 30 H 1.09000 * 109.47291 * 60.00251 * 15 14 13 31 31 H 1.09002 * 112.84939 * 45.33361 * 16 15 14 32 32 H 1.08996 * 113.61659 * 334.56769 * 17 16 15 33 33 H 1.09002 * 113.61533 * 105.47132 * 17 16 15 34 34 H 1.08994 * 113.53894 * 270.81266 * 18 17 16 35 35 H 1.09000 * 113.66403 * 139.93371 * 18 17 16 36 36 H 1.08999 * 113.61227 * 254.53171 * 19 16 15 37 37 H 1.08999 * 113.61447 * 25.34246 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 0.0925 5 6 1.4361 2.1887 1.1617 6 1 0.8270 3.0628 0.9841 7 6 1.6613 1.7558 2.4512 8 7 2.4027 0.6914 2.6674 9 14 0.9133 2.6813 3.8911 10 1 -0.4254 2.1176 4.2002 11 1 1.7942 2.5446 5.0788 12 1 0.7763 4.1175 3.5391 13 7 1.6547 2.0981 -1.2568 14 6 2.6465 1.8422 -2.3097 15 6 2.2803 2.6430 -3.5609 16 6 3.3129 2.3759 -4.6578 17 6 4.5509 3.2842 -4.5726 18 6 4.4925 3.3722 -6.1086 19 6 2.9892 3.0706 -5.9910 20 1 -0.3634 0.4826 0.9073 21 1 -0.3634 0.5445 -0.8716 22 1 -0.3634 -1.0270 -0.0358 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.5608 0.3866 3.5747 26 1 0.7338 1.8071 -1.5490 27 1 3.6335 2.1450 -1.9605 28 1 2.6562 0.7787 -2.5490 29 1 1.2932 2.3401 -3.9102 30 1 2.2706 3.7064 -3.3217 31 1 3.5538 1.3181 -4.7638 32 1 4.3618 4.2344 -4.0733 33 1 5.4396 2.7770 -4.1970 34 1 5.0573 2.5872 -6.6114 35 1 4.7091 4.3668 -6.4984 36 1 2.6188 2.3912 -6.7586 37 1 2.3710 3.9615 -5.8803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229098254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:09 Heat of formation + Delta-G solvation = -3.165407 kcal Electronic energy + Delta-G solvation = -14223.927523 eV Core-core repulsion = 12000.903246 eV Total energy + Delta-G solvation = -2223.024277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.85074 -36.45271 -33.06183 -31.17153 -29.05034 -26.20838 -25.54477 -23.85425 -23.03284 -21.00066 -19.38005 -19.13172 -16.11980 -15.50241 -15.02837 -14.70759 -14.28583 -13.85847 -13.38547 -12.59882 -12.47764 -12.36672 -12.27948 -11.97657 -11.51928 -11.13113 -10.88180 -10.80483 -10.66358 -10.48995 -10.44514 -10.13278 -10.00645 -9.81029 -9.59962 -9.45768 -8.89852 -8.29975 -7.12130 -5.92701 -3.94046 3.35142 3.41824 3.46580 4.48001 4.68217 4.73667 4.81919 4.93724 5.37676 5.39071 5.59199 5.71041 5.77775 5.83139 5.86420 5.95021 6.04183 6.10104 6.20648 6.36442 6.40490 6.43889 6.50343 6.59095 6.69154 6.75622 6.94644 7.33331 7.35735 7.54818 7.75580 7.95082 8.35506 8.64077 8.70678 9.11960 9.69602 11.14364 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.006087 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.972652 B = 4599.081149 C = 4817.664951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.687 5.687 14 C 0.062 3.938 15 C -0.104 4.104 16 C -0.109 4.109 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.138 4.138 20 H 0.065 0.935 21 H 0.030 0.970 22 H 0.021 0.979 23 H 0.010 0.990 24 H 0.092 0.908 25 H 0.258 0.742 26 H 0.324 0.676 27 H 0.062 0.938 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 1.965 -13.095 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.318 5.318 14 C -0.068 4.068 15 C -0.142 4.142 16 C -0.128 4.128 17 C -0.174 4.174 18 C -0.182 4.182 19 C -0.175 4.175 20 H 0.084 0.916 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.142 0.858 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.633 2.479 -12.754 13.095 hybrid contribution -0.526 -0.634 0.654 1.052 sum 1.107 1.844 -12.100 12.290 Atomic orbital electron populations 1.21563 0.97728 0.97900 1.01272 1.22101 0.94976 1.01241 1.00147 1.19201 0.95847 0.88546 0.85764 0.95109 1.21099 1.30309 1.11405 0.89734 0.92099 1.24920 0.95603 0.95216 0.98723 1.69890 1.39173 1.24108 1.20593 0.86579 0.78879 0.80357 0.82073 1.20889 1.21460 1.19936 1.60810 1.03850 1.63191 1.03910 1.21863 0.97277 0.95905 0.91773 1.21546 0.97511 1.01168 0.94012 1.22526 0.96243 0.99006 0.94975 1.22998 0.98366 1.00343 0.95678 1.22845 0.96941 1.01290 0.97098 1.22933 0.96333 1.00680 0.97580 0.91607 0.95110 0.95953 0.97179 0.88985 0.93196 0.85779 0.91961 0.96899 0.92676 0.91361 0.89730 0.89970 0.91767 0.90625 0.91879 0.92025 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.39 37.16 0.35 -2.42 16 2 C -0.15 -3.48 5.51 -26.73 -0.15 -3.63 16 3 C 0.21 5.42 2.33 -68.87 -0.16 5.26 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.49 -13.41 7.38 -34.44 -0.25 -13.66 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.54 5.26 -17.82 -0.09 1.45 16 8 N -0.90 -25.69 11.38 55.43 0.63 -25.06 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.69 -14.92 6.21 -107.95 -0.67 -15.59 16 14 C 0.06 1.14 5.51 -3.82 -0.02 1.12 16 15 C -0.10 -1.56 5.34 -26.73 -0.14 -1.70 16 16 C -0.11 -1.37 3.64 -89.81 -0.33 -1.69 16 17 C -0.14 -1.62 7.65 -25.82 -0.20 -1.82 16 18 C -0.14 -1.47 8.09 -25.83 -0.21 -1.68 16 19 C -0.14 -1.49 7.65 -25.92 -0.20 -1.68 16 20 H 0.06 1.57 7.12 -51.93 -0.37 1.20 16 21 H 0.03 0.61 6.36 -51.92 -0.33 0.28 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.22 7.52 -51.93 -0.39 -0.17 16 24 H 0.09 2.47 6.22 -51.93 -0.32 2.14 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.32 6.72 6.58 -39.29 -0.26 6.47 16 27 H 0.06 1.21 7.92 -51.93 -0.41 0.79 16 28 H 0.01 0.24 7.55 -51.92 -0.39 -0.15 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -27.83 290.18 -8.71 -36.54 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.62 Total: 3.64 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.40 Total: -20.46 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.04 Total: -40.65 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.83 -8.71 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229098254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.379 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds