Wall clock time and date at job start Sun Mar 29 2020 21:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46961 * 2 1 4 4 H 1.08997 * 109.47589 * 52.61610 * 3 2 1 5 5 C 1.50706 * 109.47400 * 172.62086 * 3 2 1 6 6 H 1.07994 * 120.00191 * 119.99218 * 5 3 2 7 7 C 1.37880 * 119.99588 * 300.00075 * 5 3 2 8 8 N 1.31516 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47253 * 59.99443 * 9 7 5 11 11 H 1.48492 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47262 * 299.99937 * 9 7 5 13 13 N 1.46898 * 109.47003 * 292.61834 * 3 2 1 14 14 C 1.46899 * 111.00276 * 123.64944 * 13 3 2 15 15 C 1.53005 * 112.84904 * 281.56088 * 14 13 3 16 16 C 1.53003 * 109.47071 * 298.04621 * 15 14 13 17 17 C 1.53783 * 113.61339 * 52.75546 * 14 13 3 18 18 C 1.53774 * 87.17564 * 139.94386 * 17 14 13 19 19 C 1.53778 * 113.61888 * 150.25405 * 14 13 3 20 20 H 1.09002 * 109.47397 * 301.15844 * 1 2 3 21 21 H 1.09001 * 109.47170 * 61.16310 * 1 2 3 22 22 H 1.09005 * 109.47154 * 181.15834 * 1 2 3 23 23 H 1.09001 * 109.47412 * 239.99685 * 2 1 3 24 24 H 1.09009 * 109.47073 * 119.99241 * 2 1 3 25 25 H 0.96998 * 119.99432 * 180.02562 * 8 7 5 26 26 H 1.00898 * 111.00186 * 359.69701 * 13 3 2 27 27 H 1.08997 * 109.46840 * 58.04351 * 15 14 13 28 28 H 1.08995 * 109.47088 * 178.04324 * 15 14 13 29 29 H 1.08997 * 109.47328 * 171.19988 * 16 15 14 30 30 H 1.09004 * 109.46614 * 291.19646 * 16 15 14 31 31 H 1.08998 * 109.46639 * 51.19314 * 16 15 14 32 32 H 1.09009 * 113.61286 * 254.53204 * 17 14 13 33 33 H 1.08995 * 113.61782 * 25.34687 * 17 14 13 34 34 H 1.08999 * 113.61711 * 89.15673 * 18 17 14 35 35 H 1.08997 * 113.61828 * 220.06024 * 18 17 14 36 36 H 1.09001 * 113.61314 * 334.56705 * 19 14 13 37 37 H 1.08992 * 113.61634 * 105.38306 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5728 1.9931 0.8165 5 6 3.5359 1.4465 0.1825 6 1 4.1712 1.8804 -0.5754 7 6 4.0934 0.8961 1.3171 8 7 3.3197 0.3681 2.2402 9 14 5.9476 0.9004 1.5430 10 1 6.4431 2.3004 1.5426 11 1 6.2903 0.2550 2.8357 12 1 6.5837 0.1500 0.4305 13 7 1.7009 2.0817 -1.2785 14 6 0.9165 3.3050 -1.0638 15 6 -0.5553 3.0209 -0.7572 16 6 -1.1959 2.3065 -1.9489 17 6 1.5708 4.2921 -0.0827 18 6 1.1067 5.4166 -1.0234 19 6 1.1262 4.3704 -2.1528 20 1 -0.3634 0.5317 0.8794 21 1 -0.3633 0.4957 -0.9002 22 1 -0.3634 -1.0275 0.0208 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.7119 -0.0188 3.0386 26 1 1.2120 1.4404 -1.8849 27 1 -0.6265 2.3876 0.1271 28 1 -1.0762 3.9606 -0.5740 29 1 -2.1941 1.9655 -1.6745 30 1 -1.2659 2.9955 -2.7906 31 1 -0.5838 1.4497 -2.2307 32 1 1.0921 4.3165 0.8964 33 1 2.6545 4.1933 -0.0216 34 1 0.1099 5.7936 -0.7947 35 1 1.8421 6.2111 -1.1502 36 1 2.0887 4.2940 -2.6587 37 1 0.2895 4.4570 -2.8458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229488528.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:40 Heat of formation + Delta-G solvation = 7.535341 kcal Electronic energy + Delta-G solvation = -15257.724988 eV Core-core repulsion = 13035.164730 eV Total energy + Delta-G solvation = -2222.560258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.30969 -35.20775 -32.44869 -31.26442 -29.98635 -26.35306 -25.20651 -23.93832 -22.72730 -21.57751 -19.62717 -17.34887 -16.17448 -15.54542 -14.82561 -14.52674 -14.44610 -13.59351 -13.29173 -12.77446 -12.24828 -12.06239 -11.58799 -11.56746 -11.43330 -11.13726 -10.94746 -10.79311 -10.58907 -10.58071 -10.28361 -9.97199 -9.74044 -9.62548 -9.46891 -9.22446 -9.04882 -8.24731 -7.08912 -5.88885 -3.91641 3.38239 3.42208 3.45857 4.50618 5.11106 5.19692 5.27146 5.39020 5.40619 5.48069 5.62808 5.80195 5.92906 6.04875 6.11889 6.20416 6.23650 6.29406 6.35100 6.41899 6.49273 6.53141 6.59841 6.74219 6.92516 7.02337 7.04248 7.14868 7.26989 7.59049 7.84426 8.01135 8.43950 8.64792 8.81000 9.16517 9.72804 11.16263 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.011236 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.806041 B = 2491.414708 C = 3066.758133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.220 3.780 4 H 0.022 0.978 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.668 5.668 14 C 0.094 3.906 15 C -0.136 4.136 16 C -0.150 4.150 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.122 4.122 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.099 0.901 25 H 0.258 0.742 26 H 0.318 0.682 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 4.869 -5.522 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.040 0.960 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.298 5.298 14 C 0.001 3.999 15 C -0.176 4.176 16 C -0.208 4.208 17 C -0.153 4.153 18 C -0.185 4.185 19 C -0.160 4.160 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.249 5.097 -5.383 9.696 hybrid contribution 0.086 -0.522 0.553 0.766 sum -6.163 4.575 -4.829 9.068 Atomic orbital electron populations 1.22205 0.99646 0.99449 1.00566 1.22054 0.91498 1.01567 1.02803 1.19140 0.95289 0.89068 0.85262 0.95991 1.21265 0.91712 1.36019 1.03404 0.92177 1.24959 0.97698 0.95910 0.96144 1.69866 1.34378 1.40359 1.09327 0.86655 0.86171 0.78090 0.76986 1.20481 1.21625 1.20469 1.61115 1.44218 1.07053 1.17430 1.22206 0.90360 0.91257 0.96052 1.21995 0.96376 1.00359 0.98838 1.21831 0.99938 1.00588 0.98406 1.22927 1.02354 0.93843 0.96222 1.22810 1.00389 0.96794 0.98525 1.23009 1.01456 0.95634 0.95914 0.93871 0.93223 0.94931 0.94690 0.88292 0.93213 0.86379 0.91173 0.92541 0.93333 0.93070 0.91966 0.92712 0.88499 0.91280 0.92097 0.89746 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.14 -3.30 5.08 -26.73 -0.14 -3.43 16 3 C 0.22 5.36 1.40 -68.86 -0.10 5.27 16 4 H 0.02 0.60 6.58 -51.93 -0.34 0.25 16 5 C -0.48 -13.33 8.81 -34.44 -0.30 -13.63 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.46 5.28 -17.82 -0.09 1.36 16 8 N -0.90 -25.67 11.29 55.43 0.63 -25.04 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.67 -13.99 6.17 -93.43 -0.58 -14.57 16 14 C 0.09 1.69 0.61 -130.79 -0.08 1.61 16 15 C -0.14 -2.20 4.71 -26.73 -0.13 -2.32 16 16 C -0.15 -2.11 8.54 37.16 0.32 -1.79 16 17 C -0.12 -2.17 5.94 -25.92 -0.15 -2.32 16 18 C -0.15 -2.23 7.75 -25.83 -0.20 -2.43 16 19 C -0.12 -1.94 7.33 -25.82 -0.19 -2.13 16 20 H 0.04 0.86 7.29 -51.93 -0.38 0.48 16 21 H 0.05 0.86 3.23 -51.93 -0.17 0.70 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.81 8.13 -51.93 -0.42 0.39 16 24 H 0.10 2.64 5.91 -51.92 -0.31 2.34 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.32 6.30 5.48 -39.29 -0.22 6.08 16 27 H 0.07 1.26 5.61 -51.93 -0.29 0.96 16 28 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.66 7.26 -51.93 -0.38 0.28 16 31 H 0.06 0.93 4.65 -51.93 -0.24 0.68 16 32 H 0.05 1.04 8.10 -51.92 -0.42 0.61 16 33 H 0.10 2.08 8.09 -51.93 -0.42 1.66 16 34 H 0.07 0.94 7.61 -51.93 -0.40 0.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.05 0.76 7.14 -51.93 -0.37 0.38 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -27.55 273.37 -7.56 -35.11 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.96 Total: 6.34 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -0.75 Total: -22.66 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.05 Total: -39.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.55 -7.56 -35.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229488528.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.650 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds