Wall clock time and date at job start Sun Mar 29 2020 21:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46961 * 2 1 4 4 H 1.08997 * 109.47589 * 52.61610 * 3 2 1 5 5 C 1.50706 * 109.47400 * 172.62086 * 3 2 1 6 6 H 1.07994 * 120.00191 * 119.99218 * 5 3 2 7 7 C 1.37880 * 119.99588 * 300.00075 * 5 3 2 8 8 N 1.31516 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47253 * 59.99443 * 9 7 5 11 11 H 1.48492 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47262 * 299.99937 * 9 7 5 13 13 N 1.46898 * 109.47003 * 292.61834 * 3 2 1 14 14 C 1.46899 * 111.00276 * 123.64944 * 13 3 2 15 15 C 1.53005 * 112.84904 * 281.56088 * 14 13 3 16 16 C 1.53003 * 109.47071 * 298.04621 * 15 14 13 17 17 C 1.53783 * 113.61339 * 52.75546 * 14 13 3 18 18 C 1.53774 * 87.17564 * 139.94386 * 17 14 13 19 19 C 1.53778 * 113.61888 * 150.25405 * 14 13 3 20 20 H 1.09002 * 109.47397 * 301.15844 * 1 2 3 21 21 H 1.09001 * 109.47170 * 61.16310 * 1 2 3 22 22 H 1.09005 * 109.47154 * 181.15834 * 1 2 3 23 23 H 1.09001 * 109.47412 * 239.99685 * 2 1 3 24 24 H 1.09009 * 109.47073 * 119.99241 * 2 1 3 25 25 H 0.96998 * 119.99432 * 180.02562 * 8 7 5 26 26 H 1.00898 * 111.00186 * 359.69701 * 13 3 2 27 27 H 1.08997 * 109.46840 * 58.04351 * 15 14 13 28 28 H 1.08995 * 109.47088 * 178.04324 * 15 14 13 29 29 H 1.08997 * 109.47328 * 171.19988 * 16 15 14 30 30 H 1.09004 * 109.46614 * 291.19646 * 16 15 14 31 31 H 1.08998 * 109.46639 * 51.19314 * 16 15 14 32 32 H 1.09009 * 113.61286 * 254.53204 * 17 14 13 33 33 H 1.08995 * 113.61782 * 25.34687 * 17 14 13 34 34 H 1.08999 * 113.61711 * 89.15673 * 18 17 14 35 35 H 1.08997 * 113.61828 * 220.06024 * 18 17 14 36 36 H 1.09001 * 113.61314 * 334.56705 * 19 14 13 37 37 H 1.08992 * 113.61634 * 105.38306 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5728 1.9931 0.8165 5 6 3.5359 1.4465 0.1825 6 1 4.1712 1.8804 -0.5754 7 6 4.0934 0.8961 1.3171 8 7 3.3197 0.3681 2.2402 9 14 5.9476 0.9004 1.5430 10 1 6.4431 2.3004 1.5426 11 1 6.2903 0.2550 2.8357 12 1 6.5837 0.1500 0.4305 13 7 1.7009 2.0817 -1.2785 14 6 0.9165 3.3050 -1.0638 15 6 -0.5553 3.0209 -0.7572 16 6 -1.1959 2.3065 -1.9489 17 6 1.5708 4.2921 -0.0827 18 6 1.1067 5.4166 -1.0234 19 6 1.1262 4.3704 -2.1528 20 1 -0.3634 0.5317 0.8794 21 1 -0.3633 0.4957 -0.9002 22 1 -0.3634 -1.0275 0.0208 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.7119 -0.0188 3.0386 26 1 1.2120 1.4404 -1.8849 27 1 -0.6265 2.3876 0.1271 28 1 -1.0762 3.9606 -0.5740 29 1 -2.1941 1.9655 -1.6745 30 1 -1.2659 2.9955 -2.7906 31 1 -0.5838 1.4497 -2.2307 32 1 1.0921 4.3165 0.8964 33 1 2.6545 4.1933 -0.0216 34 1 0.1099 5.7936 -0.7947 35 1 1.8421 6.2111 -1.1502 36 1 2.0887 4.2940 -2.6587 37 1 0.2895 4.4570 -2.8458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229488528.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:40 Heat of formation + Delta-G solvation = -8.860964 kcal Electronic energy + Delta-G solvation = -15258.435985 eV Core-core repulsion = 13035.164730 eV Total energy + Delta-G solvation = -2223.271255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.75683 -36.98860 -34.23238 -32.81985 -31.64999 -28.29858 -26.59312 -25.36243 -24.51071 -22.90533 -21.50050 -18.79562 -18.27921 -17.02637 -16.65742 -16.07013 -15.90054 -15.21161 -14.80446 -14.59799 -13.73187 -13.40330 -13.33483 -13.18463 -12.92055 -12.80241 -12.61439 -12.52670 -12.24006 -11.94798 -11.83533 -11.68527 -11.49716 -11.31181 -11.07077 -10.90806 -10.69156 -10.36348 -8.81931 -8.01255 -6.11862 1.41344 1.42238 1.49925 2.45998 3.22823 3.68390 3.84463 3.94530 4.07899 4.11313 4.39263 4.47617 4.51496 4.58947 4.71392 4.73747 4.87942 4.94861 5.05870 5.08483 5.11658 5.14364 5.22748 5.26260 5.28047 5.40734 5.51071 5.57316 5.65180 5.74131 5.86918 5.94263 6.44413 6.79324 7.03026 7.09567 7.57155 9.00706 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.011236 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.806041 B = 2491.414708 C = 3066.758133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.233 3.767 4 H -0.009 1.009 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.085 3.915 15 C -0.132 4.132 16 C -0.146 4.146 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.112 4.112 20 H 0.033 0.967 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.257 0.743 26 H 0.325 0.675 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 5.690 -6.924 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.125 3.875 4 H 0.009 0.991 5 C -0.541 4.541 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.007 4.007 15 C -0.171 4.171 16 C -0.203 4.203 17 C -0.169 4.169 18 C -0.165 4.165 19 C -0.150 4.150 20 H 0.052 0.948 21 H 0.091 0.909 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.413 5.927 -6.800 11.676 hybrid contribution 0.449 -0.749 0.996 1.324 sum -6.964 5.178 -5.804 10.440 Atomic orbital electron populations 1.22074 0.96437 1.00782 1.01325 1.21893 0.94393 1.00389 1.00896 1.18795 0.93404 0.89439 0.85905 0.99075 1.21563 0.93509 1.35837 1.03215 0.93582 1.25641 1.01652 0.95720 0.95980 1.69999 1.35817 1.40885 1.09563 0.85745 0.81513 0.78086 0.77031 1.20201 1.21133 1.19966 1.60993 1.45874 1.07885 1.15758 1.22447 0.91265 0.90019 0.96994 1.21929 0.95062 1.01196 0.98936 1.21800 1.00276 1.00345 0.97926 1.22907 1.00048 0.97114 0.96804 1.22764 1.01814 0.95833 0.96061 1.22918 1.01899 0.94316 0.95867 0.94810 0.90853 0.93195 0.94931 0.91726 0.93349 0.85594 0.93502 0.90620 0.91666 0.91155 0.93047 0.93956 0.92266 0.88803 0.90962 0.91007 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 8.51 71.98 0.61 -5.11 16 2 C -0.14 -6.53 5.08 30.59 0.16 -6.37 16 3 C 0.23 11.67 1.40 44.17 0.06 11.74 16 4 H -0.01 -0.48 6.58 -2.39 -0.02 -0.49 16 5 C -0.50 -28.46 8.81 25.60 0.23 -28.23 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.42 5.28 84.66 0.45 0.87 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.87 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.36 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.67 -28.26 6.17 -449.51 -2.77 -31.03 16 14 C 0.08 2.96 0.61 4.06 0.00 2.96 16 15 C -0.13 -3.97 4.71 30.60 0.14 -3.82 16 16 C -0.15 -3.60 8.54 71.98 0.62 -2.99 16 17 C -0.13 -4.94 5.94 31.12 0.18 -4.75 16 18 C -0.13 -3.53 7.75 31.18 0.24 -3.29 16 19 C -0.11 -3.27 7.33 31.18 0.23 -3.04 16 20 H 0.03 1.34 7.29 -2.39 -0.02 1.32 16 21 H 0.07 2.44 3.23 -2.39 -0.01 2.43 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 24 H 0.06 3.55 5.91 -2.38 -0.01 3.54 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.33 12.60 5.48 -89.70 -0.49 12.11 16 27 H 0.05 1.63 5.61 -2.39 -0.01 1.62 16 28 H 0.08 1.98 7.32 -2.39 -0.02 1.97 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.48 7.26 -2.39 -0.02 1.46 16 31 H 0.05 1.38 4.65 -2.39 -0.01 1.37 16 32 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 33 H 0.06 2.65 8.09 -2.39 -0.02 2.63 16 34 H 0.09 2.19 7.61 -2.39 -0.02 2.17 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 1.94 7.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.78 273.37 2.97 -57.81 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.55 Total: 21.76 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 2.92 Total: -42.04 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.53 Total: -84.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -60.78 2.97 -57.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229488528.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.952 kcal (2) G-P(sol) polarization free energy of solvation -60.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds