Wall clock time and date at job start Sun Mar 29 2020 21:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47496 * 2 1 4 4 C 1.46900 * 111.00110 * 59.55732 * 3 2 1 5 5 C 1.52997 * 109.47085 * 66.04625 * 4 3 2 6 6 C 1.50705 * 109.47181 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99466 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00053 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46775 * 60.00557 * 10 8 6 12 12 H 1.48500 * 109.46961 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47208 * 300.00432 * 10 8 6 14 14 C 1.46901 * 110.99993 * 295.60453 * 3 2 1 15 15 C 1.53003 * 109.46897 * 288.22383 * 14 3 2 16 16 C 1.53782 * 113.61914 * 273.57366 * 15 14 3 17 17 C 1.53953 * 87.01911 * 220.04856 * 16 15 14 18 18 C 1.53777 * 87.11239 * 25.36293 * 17 16 15 19 19 H 1.09011 * 109.47108 * 60.91650 * 1 2 3 20 20 H 1.08997 * 109.47698 * 180.91239 * 1 2 3 21 21 H 1.08995 * 109.47062 * 300.92069 * 1 2 3 22 22 H 1.09003 * 109.47018 * 239.99775 * 2 1 3 23 23 H 1.09003 * 109.46945 * 120.00276 * 2 1 3 24 24 H 1.09000 * 109.47500 * 186.05080 * 4 3 2 25 25 H 1.09006 * 109.46761 * 306.04781 * 4 3 2 26 26 H 1.09005 * 109.47079 * 300.00153 * 5 4 3 27 27 H 1.08996 * 109.47223 * 60.00329 * 5 4 3 28 28 H 0.97005 * 120.00361 * 179.97438 * 9 8 6 29 29 H 1.08992 * 109.47455 * 48.22201 * 14 3 2 30 30 H 1.09002 * 109.47324 * 168.23239 * 14 3 2 31 31 H 1.09004 * 112.84665 * 44.77630 * 15 14 3 32 32 H 1.08998 * 113.61355 * 334.57453 * 16 15 14 33 33 H 1.09001 * 113.60695 * 105.46915 * 16 15 14 34 34 H 1.08998 * 113.53752 * 270.80957 * 17 16 15 35 35 H 1.08998 * 113.66077 * 139.93417 * 17 16 15 36 36 H 1.09004 * 113.61434 * 220.08455 * 18 17 16 37 37 H 1.09002 * 113.68800 * 89.19990 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5401 2.1129 1.1823 5 6 2.1625 1.5068 2.4417 6 6 1.6700 2.2532 3.6547 7 1 0.9816 3.0773 3.5389 8 6 2.0975 1.8835 4.9123 9 7 2.9354 0.8797 5.0532 10 14 1.4876 2.8092 6.4158 11 1 0.0084 2.7051 6.4948 12 1 2.0917 2.2208 7.6381 13 1 1.8783 4.2379 6.3097 14 6 1.6364 2.0788 -1.2368 15 6 2.4620 1.5340 -2.4040 16 6 3.8202 2.2340 -2.5777 17 6 3.5697 2.1676 -4.0953 18 6 2.0680 2.1271 -3.7670 19 1 -0.3634 0.4996 -0.8982 20 1 -0.3634 -1.0275 0.0164 21 1 -0.3633 0.5280 0.8816 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8900 24 1 1.8264 3.1617 1.1042 25 1 0.4543 2.0361 1.2406 26 1 1.8761 0.4579 2.5198 27 1 3.2482 1.5835 2.3834 28 1 3.2366 0.6198 5.9380 29 1 0.5771 1.9136 -1.4328 30 1 1.8235 3.1471 -1.1270 31 1 2.5283 0.4460 -2.4040 32 1 3.8416 3.2496 -2.1827 33 1 4.6669 1.6323 -2.2472 34 1 3.9404 1.2529 -4.5580 35 1 3.8760 3.0673 -4.6290 36 1 1.5021 1.4393 -4.3954 37 1 1.6081 3.1129 -3.6978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230316709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:00 Heat of formation + Delta-G solvation = 7.077239 kcal Electronic energy + Delta-G solvation = -14324.923800 eV Core-core repulsion = 12102.343677 eV Total energy + Delta-G solvation = -2222.580123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09337 -36.96295 -33.04785 -30.24198 -29.79578 -26.77422 -25.44565 -24.26773 -23.35376 -21.21942 -19.16678 -18.91095 -16.45430 -15.58434 -15.41531 -14.80181 -14.47994 -14.30044 -13.54513 -12.86996 -12.35152 -12.30205 -12.19475 -12.00796 -11.87050 -11.42202 -11.16717 -10.91524 -10.75856 -10.65400 -10.53667 -10.24011 -10.13776 -10.02849 -9.64679 -9.22072 -9.07357 -8.28692 -7.53131 -5.95671 -3.97869 3.35441 3.39777 3.42116 4.39464 4.54803 4.76618 4.85104 4.93534 5.14139 5.39970 5.49961 5.56355 5.63148 5.73298 5.80015 5.84895 5.86823 5.91701 5.94279 6.11383 6.17933 6.30184 6.31134 6.37622 6.43065 6.64085 6.69026 6.78072 7.06157 7.61457 7.68684 7.87307 7.97823 8.15037 8.48901 9.09566 9.65447 11.15702 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048434 B = 0.006105 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.965022 B = 4585.625634 C = 4776.764939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.059 3.941 5 C 0.029 3.971 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.059 3.941 15 C -0.101 4.101 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.139 4.139 19 H 0.048 0.952 20 H 0.053 0.947 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.017 0.983 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 0.583 -15.171 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.257 5.257 4 C -0.068 4.068 5 C -0.008 4.008 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.069 4.069 15 C -0.120 4.120 16 C -0.163 4.163 17 C -0.183 4.183 18 C -0.177 4.177 19 H 0.067 0.933 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.300 0.476 -15.004 15.067 hybrid contribution -1.242 0.483 0.893 1.604 sum -2.542 0.960 -14.110 14.369 Atomic orbital electron populations 1.22406 0.99130 1.01630 1.01891 1.22130 0.92329 0.91140 1.02215 1.62296 1.59436 1.02051 1.01920 1.22384 0.96908 0.97035 0.90478 1.19068 0.96633 0.95902 0.89216 1.21177 1.27254 1.16157 0.91466 0.92964 1.24978 0.95138 0.95163 0.98957 1.69961 1.32743 1.27504 1.23087 0.86681 0.78977 0.80132 0.82329 1.20340 1.21286 1.20264 1.22140 0.96556 0.98110 0.90119 1.22517 0.96212 1.00023 0.93244 1.22871 0.97749 1.00994 0.94706 1.22860 0.96618 1.01454 0.97331 1.22938 0.96376 1.01096 0.97269 0.93312 0.92840 0.91566 0.91999 0.89892 0.92522 0.95749 0.96495 0.95868 0.92993 0.95018 0.91499 0.89398 0.90314 0.91546 0.90635 0.91957 0.92056 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 9.27 37.15 0.34 -2.68 16 2 C 0.05 0.86 5.69 -3.83 -0.02 0.84 16 3 N -0.53 -9.86 4.67 -234.63 -1.10 -10.95 16 4 C 0.06 1.26 4.64 -3.83 -0.02 1.25 16 5 C 0.03 0.77 4.90 -27.88 -0.14 0.64 16 6 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 7 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.06 0.90 4.68 -3.82 -0.02 0.88 16 15 C -0.10 -1.32 3.75 -89.81 -0.34 -1.65 16 16 C -0.13 -1.58 7.65 -25.83 -0.20 -1.78 16 17 C -0.15 -1.51 8.09 -25.83 -0.21 -1.72 16 18 C -0.14 -1.50 7.65 -25.92 -0.20 -1.70 16 19 H 0.05 0.70 6.33 -51.92 -0.33 0.37 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.07 1.18 6.22 -51.93 -0.32 0.86 16 22 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 23 H 0.08 1.61 6.49 -51.93 -0.34 1.27 16 24 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 25 H 0.02 0.52 5.97 -51.93 -0.31 0.21 16 26 H 0.02 0.47 6.56 -51.93 -0.34 0.13 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.03 0.47 5.97 -51.93 -0.31 0.16 16 30 H 0.07 1.02 7.54 -51.93 -0.39 0.63 16 31 H 0.09 1.18 6.54 -51.93 -0.34 0.84 16 32 H 0.08 1.02 7.91 -51.93 -0.41 0.60 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -29.63 286.53 -8.60 -38.22 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.33 Total: -2.37 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.20 Total: -19.61 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.36 Total: -37.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.63 -8.60 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230316709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.299 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds