Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47496 * 2 1 4 4 C 1.46900 * 111.00110 * 59.55732 * 3 2 1 5 5 C 1.52997 * 109.47085 * 66.04625 * 4 3 2 6 6 C 1.50705 * 109.47181 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99466 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00053 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46775 * 60.00557 * 10 8 6 12 12 H 1.48500 * 109.46961 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47208 * 300.00432 * 10 8 6 14 14 C 1.46901 * 110.99993 * 295.60453 * 3 2 1 15 15 C 1.53003 * 109.46897 * 288.22383 * 14 3 2 16 16 C 1.53782 * 113.61914 * 273.57366 * 15 14 3 17 17 C 1.53953 * 87.01911 * 220.04856 * 16 15 14 18 18 C 1.53777 * 87.11239 * 25.36293 * 17 16 15 19 19 H 1.09011 * 109.47108 * 60.91650 * 1 2 3 20 20 H 1.08997 * 109.47698 * 180.91239 * 1 2 3 21 21 H 1.08995 * 109.47062 * 300.92069 * 1 2 3 22 22 H 1.09003 * 109.47018 * 239.99775 * 2 1 3 23 23 H 1.09003 * 109.46945 * 120.00276 * 2 1 3 24 24 H 1.09000 * 109.47500 * 186.05080 * 4 3 2 25 25 H 1.09006 * 109.46761 * 306.04781 * 4 3 2 26 26 H 1.09005 * 109.47079 * 300.00153 * 5 4 3 27 27 H 1.08996 * 109.47223 * 60.00329 * 5 4 3 28 28 H 0.97005 * 120.00361 * 179.97438 * 9 8 6 29 29 H 1.08992 * 109.47455 * 48.22201 * 14 3 2 30 30 H 1.09002 * 109.47324 * 168.23239 * 14 3 2 31 31 H 1.09004 * 112.84665 * 44.77630 * 15 14 3 32 32 H 1.08998 * 113.61355 * 334.57453 * 16 15 14 33 33 H 1.09001 * 113.60695 * 105.46915 * 16 15 14 34 34 H 1.08998 * 113.53752 * 270.80957 * 17 16 15 35 35 H 1.08998 * 113.66077 * 139.93417 * 17 16 15 36 36 H 1.09004 * 113.61434 * 220.08455 * 18 17 16 37 37 H 1.09002 * 113.68800 * 89.19990 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5401 2.1129 1.1823 5 6 2.1625 1.5068 2.4417 6 6 1.6700 2.2532 3.6547 7 1 0.9816 3.0773 3.5389 8 6 2.0975 1.8835 4.9123 9 7 2.9354 0.8797 5.0532 10 14 1.4876 2.8092 6.4158 11 1 0.0084 2.7051 6.4948 12 1 2.0917 2.2208 7.6381 13 1 1.8783 4.2379 6.3097 14 6 1.6364 2.0788 -1.2368 15 6 2.4620 1.5340 -2.4040 16 6 3.8202 2.2340 -2.5777 17 6 3.5697 2.1676 -4.0953 18 6 2.0680 2.1271 -3.7670 19 1 -0.3634 0.4996 -0.8982 20 1 -0.3634 -1.0275 0.0164 21 1 -0.3633 0.5280 0.8816 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8900 24 1 1.8264 3.1617 1.1042 25 1 0.4543 2.0361 1.2406 26 1 1.8761 0.4579 2.5198 27 1 3.2482 1.5835 2.3834 28 1 3.2366 0.6198 5.9380 29 1 0.5771 1.9136 -1.4328 30 1 1.8235 3.1471 -1.1270 31 1 2.5283 0.4460 -2.4040 32 1 3.8416 3.2496 -2.1827 33 1 4.6669 1.6323 -2.2472 34 1 3.9404 1.2529 -4.5580 35 1 3.8760 3.0673 -4.6290 36 1 1.5021 1.4393 -4.3954 37 1 1.6081 3.1129 -3.6978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230316709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = -10.472920 kcal Electronic energy + Delta-G solvation = -14325.684832 eV Core-core repulsion = 12102.343677 eV Total energy + Delta-G solvation = -2223.341155 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23042 -38.29985 -35.19190 -32.11280 -31.15022 -28.31140 -26.40423 -26.01489 -24.75853 -22.77322 -20.58735 -20.05758 -18.58262 -16.90189 -16.78708 -16.51453 -15.97741 -15.48790 -15.08743 -14.23213 -14.17405 -13.78250 -13.48637 -13.30285 -13.23305 -12.88728 -12.80576 -12.55030 -12.36328 -12.19561 -11.91575 -11.71076 -11.49459 -11.26346 -11.20002 -10.94308 -10.83689 -10.51589 -9.00360 -8.19037 -6.30539 1.39666 1.43128 1.51019 2.40695 3.12766 3.14163 3.80952 3.89643 3.94756 4.09343 4.21035 4.29078 4.48251 4.52971 4.53417 4.64890 4.68778 4.80480 4.94030 4.95731 4.99295 5.03714 5.11858 5.15422 5.20166 5.23574 5.33808 5.48649 5.49852 5.69734 5.70741 5.82321 6.14969 6.38889 6.42472 6.86924 7.38483 8.92976 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048434 B = 0.006105 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.965022 B = 4585.625634 C = 4776.764939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 N -0.547 5.547 4 C 0.076 3.924 5 C 0.039 3.961 6 C -0.546 4.546 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.062 3.938 15 C -0.105 4.105 16 C -0.135 4.135 17 C -0.134 4.134 18 C -0.128 4.128 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.028 0.972 26 H -0.006 1.006 27 H -0.013 1.013 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 1.302 -16.380 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.078 4.078 3 N -0.271 5.271 4 C -0.052 4.052 5 C 0.002 3.998 6 C -0.584 4.584 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.066 4.066 15 C -0.124 4.124 16 C -0.173 4.173 17 C -0.171 4.171 18 C -0.166 4.166 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.012 0.988 27 H 0.006 0.994 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.379 1.199 -16.238 16.455 hybrid contribution -0.863 0.219 1.239 1.526 sum -3.242 1.418 -14.999 15.411 Atomic orbital electron populations 1.22306 0.97677 1.02667 1.01497 1.22109 0.93532 0.90307 1.01806 1.62204 1.60022 1.02652 1.02176 1.22002 0.96521 0.96707 0.89927 1.18880 0.94514 0.94868 0.91585 1.21612 1.27567 1.16594 0.92626 0.92335 1.25952 0.95091 0.95994 1.02523 1.70106 1.33942 1.29109 1.24061 0.85501 0.78817 0.78882 0.77836 1.19134 1.20747 1.19173 1.22210 0.97551 0.97739 0.89093 1.22545 0.96256 0.99935 0.93624 1.22916 0.97171 1.00336 0.96881 1.22820 0.96255 1.02542 0.95522 1.22899 0.96829 1.01452 0.95439 0.91398 0.91088 0.94120 0.89497 0.93174 0.92669 0.95434 0.98754 0.99419 0.92776 0.94063 0.91771 0.89585 0.91004 0.92747 0.89692 0.90738 0.90621 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.55 9.27 71.98 0.67 -4.88 16 2 C 0.05 1.72 5.69 86.30 0.49 2.21 16 3 N -0.55 -20.26 4.67 -896.24 -4.18 -24.44 16 4 C 0.08 3.33 4.64 86.30 0.40 3.73 16 5 C 0.04 2.15 4.90 29.85 0.15 2.30 16 6 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 0.14 5.46 84.65 0.46 0.60 16 9 N -0.93 -58.07 13.29 21.44 0.28 -57.78 16 10 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.06 1.79 4.68 86.30 0.40 2.19 16 15 C -0.10 -2.53 3.75 -10.27 -0.04 -2.57 16 16 C -0.14 -3.25 7.65 31.18 0.24 -3.02 16 17 C -0.13 -2.43 8.09 31.18 0.25 -2.18 16 18 C -0.13 -2.38 7.65 31.12 0.24 -2.14 16 19 H 0.07 1.79 6.33 -2.38 -0.02 1.78 16 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.04 1.43 6.22 -2.39 -0.01 1.42 16 22 H 0.09 2.52 6.47 -2.39 -0.02 2.51 16 23 H 0.05 2.03 6.49 -2.39 -0.02 2.01 16 24 H 0.05 2.41 7.86 -2.39 -0.02 2.39 16 25 H 0.03 1.19 5.97 -2.38 -0.01 1.18 16 26 H -0.01 -0.34 6.56 -2.38 -0.02 -0.36 16 27 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.04 1.13 5.97 -2.39 -0.01 1.11 16 30 H 0.06 1.90 7.54 -2.39 -0.02 1.88 16 31 H 0.09 2.12 6.54 -2.38 -0.02 2.11 16 32 H 0.07 1.81 7.91 -2.39 -0.02 1.79 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -64.46 286.53 2.64 -61.82 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.02 Total: 8.88 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.49 Total: -35.45 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.90 Total: -82.23 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.46 2.64 -61.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230316709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.347 kcal (2) G-P(sol) polarization free energy of solvation -64.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds