Wall clock time and date at job start Sun Mar 29 2020 21:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53014 * 1 3 3 C 1.53001 * 109.46710 * 2 1 4 4 H 1.09001 * 109.46988 * 56.12550 * 3 2 1 5 5 C 1.50699 * 109.46551 * 176.12864 * 3 2 1 6 6 H 1.08002 * 119.99882 * 120.96807 * 5 3 2 7 7 C 1.37876 * 119.99858 * 300.96019 * 5 3 2 8 8 N 1.31516 * 119.99790 * 164.96067 * 7 5 3 9 9 Si 1.86798 * 120.00381 * 344.95995 * 7 5 3 10 10 H 1.48492 * 109.47235 * 264.61758 * 9 7 5 11 11 H 1.48507 * 109.46744 * 24.61411 * 9 7 5 12 12 H 1.48494 * 109.47126 * 144.61002 * 9 7 5 13 13 N 1.46900 * 109.47200 * 296.12575 * 3 2 1 14 14 C 1.46900 * 111.00117 * 142.46133 * 13 3 2 15 15 C 1.53007 * 109.46672 * 293.83058 * 14 13 3 16 16 C 1.52997 * 109.46889 * 53.82664 * 14 13 3 17 17 C 1.52992 * 109.47235 * 173.83263 * 14 13 3 18 18 C 1.53005 * 117.49501 * 243.61955 * 17 14 13 19 19 C 1.52998 * 60.00121 * 252.50777 * 18 17 14 20 20 H 1.08999 * 109.46559 * 306.10933 * 1 2 3 21 21 H 1.08995 * 109.47030 * 66.11158 * 1 2 3 22 22 H 1.09000 * 109.46666 * 186.11286 * 1 2 3 23 23 H 1.08991 * 109.46918 * 240.00176 * 2 1 3 24 24 H 1.08997 * 109.46738 * 119.99884 * 2 1 3 25 25 H 0.97003 * 120.00049 * 179.97438 * 8 7 5 26 26 H 1.00900 * 110.99960 * 18.50741 * 13 3 2 27 27 H 1.08998 * 109.47330 * 66.77176 * 15 14 13 28 28 H 1.09001 * 109.46586 * 186.76848 * 15 14 13 29 29 H 1.08994 * 109.46887 * 306.76256 * 15 14 13 30 30 H 1.08993 * 109.47178 * 56.97564 * 16 14 13 31 31 H 1.09007 * 109.47002 * 176.96741 * 16 14 13 32 32 H 1.08995 * 109.47550 * 296.96630 * 16 14 13 33 33 H 1.08999 * 115.55491 * 29.32335 * 17 14 13 34 34 H 1.08998 * 117.49917 * 0.02562 * 18 17 14 35 35 H 1.09008 * 117.49662 * 145.02222 * 18 17 14 36 36 H 1.08997 * 117.50056 * 252.51299 * 19 18 17 37 37 H 1.08999 * 117.49641 * 107.48754 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6211 1.9760 0.8532 5 6 3.5440 1.4436 0.0959 6 1 4.1343 1.9071 -0.6807 7 6 4.1663 0.8530 1.1752 8 7 5.4535 0.5874 1.1277 9 14 3.1813 0.4300 2.7050 10 1 3.3080 1.5294 3.6950 11 1 1.7524 0.2542 2.3407 12 1 3.7002 -0.8300 3.2952 13 7 1.6282 2.1075 -1.2435 14 6 1.2655 3.5093 -0.9957 15 6 0.0097 3.5645 -0.1234 16 6 2.4172 4.2146 -0.2768 17 6 0.9916 4.2085 -2.3287 18 6 1.9170 5.3606 -2.7252 19 6 0.4827 5.6505 -2.2786 20 1 -0.3632 0.6056 0.8303 21 1 -0.3633 0.4161 -0.9396 22 1 -0.3633 -1.0218 0.1094 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.8914 0.1722 1.8872 26 1 0.8695 1.6103 -1.6852 27 1 0.2388 3.1749 0.8685 28 1 -0.3288 4.5971 -0.0388 29 1 -0.7756 2.9609 -0.5784 30 1 3.3251 4.1286 -0.8738 31 1 2.1702 5.2676 -0.1410 32 1 2.5768 3.7504 0.6963 33 1 0.6137 3.5688 -3.1262 34 1 2.7211 5.6201 -2.0366 35 1 2.1481 5.4790 -3.7839 36 1 -0.2298 5.9595 -3.0433 37 1 0.3429 6.1010 -1.2959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233868827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:14 Heat of formation + Delta-G solvation = 26.588997 kcal Electronic energy + Delta-G solvation = -15172.698836 eV Core-core repulsion = 12950.964807 eV Total energy + Delta-G solvation = -2221.734029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.91363 -36.01204 -32.72973 -31.79833 -28.75551 -27.32935 -26.38443 -23.21329 -22.31848 -21.88317 -19.55936 -18.05026 -16.70243 -16.08670 -14.90164 -14.55315 -13.95803 -13.73130 -13.15795 -12.73651 -12.67895 -12.45862 -11.89923 -11.73051 -11.63926 -11.09614 -11.04639 -10.87506 -10.71868 -10.53005 -10.33326 -10.10914 -9.86673 -9.77082 -9.59496 -9.28845 -9.00252 -8.38210 -7.21238 -5.99463 -3.89280 3.29284 3.38900 3.42007 4.13907 4.47869 4.87094 5.17106 5.27566 5.31551 5.45552 5.66769 5.71440 5.82756 5.86889 5.87978 5.90283 6.04948 6.07183 6.18246 6.26857 6.42489 6.43059 6.48797 6.54812 6.63406 6.66827 6.78880 6.91606 7.03564 7.24350 7.30665 7.87151 8.11031 8.40277 8.85444 9.19092 9.67966 11.14114 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.011027 C = 0.009653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.801032 B = 2538.607031 C = 2899.967550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.192 3.808 4 H 0.007 0.993 5 C -0.489 4.489 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.897 5.897 9 Si 0.850 3.150 10 H -0.285 1.285 11 H -0.249 1.249 12 H -0.289 1.289 13 N -0.663 5.663 14 C 0.146 3.854 15 C -0.176 4.176 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.178 4.178 19 C -0.188 4.188 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.260 0.740 26 H 0.319 0.681 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 5.786 -3.441 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.084 3.916 4 H 0.024 0.976 5 C -0.527 4.527 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.678 3.322 10 H -0.212 1.212 11 H -0.173 1.173 12 H -0.215 1.215 13 N -0.293 5.293 14 C 0.054 3.946 15 C -0.236 4.236 16 C -0.187 4.187 17 C -0.145 4.145 18 C -0.215 4.215 19 C -0.226 4.226 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.003 5.839 -3.530 12.109 hybrid contribution -1.281 -0.462 1.393 1.948 sum -11.285 5.376 -2.138 12.681 Atomic orbital electron populations 1.21917 0.98615 1.00230 1.00404 1.22354 0.92559 1.00756 1.02134 1.19576 0.96486 0.88744 0.86788 0.97608 1.21041 0.89001 1.35514 1.07139 0.90220 1.24912 0.94658 0.95284 0.98392 1.69979 1.10211 1.42783 1.30576 0.87504 0.82224 0.77890 0.84562 1.21191 1.17296 1.21523 1.60690 1.40787 1.00226 1.27613 1.20283 0.92942 0.90332 0.91052 1.22595 0.98749 1.01183 1.01031 1.21918 0.98077 0.96964 1.01776 1.22234 1.03395 0.89795 0.99088 1.23072 0.93605 1.03459 1.01392 1.22943 0.97585 0.99794 1.02262 0.93748 0.93511 0.93926 0.91974 0.91953 0.92993 0.86263 0.92420 0.92969 0.93379 0.91296 0.94569 0.91322 0.88366 0.87975 0.89642 0.89627 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.66 37.16 0.36 -2.30 16 2 C -0.14 -2.97 4.60 -26.72 -0.12 -3.10 16 3 C 0.19 4.37 0.82 -68.86 -0.06 4.31 16 4 H 0.01 0.15 4.19 -51.93 -0.22 -0.07 16 5 C -0.49 -13.41 7.71 -34.44 -0.27 -13.67 16 6 H 0.08 2.45 7.95 -52.49 -0.42 2.03 16 7 C 0.07 1.94 5.33 -17.82 -0.09 1.85 16 8 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 9 Si 0.85 20.92 25.69 -169.99 -4.37 16.55 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.25 -5.68 5.21 56.52 0.29 -5.39 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 N -0.66 -13.28 5.94 -94.25 -0.56 -13.84 16 14 C 0.15 2.55 0.80 -131.60 -0.10 2.45 16 15 C -0.18 -2.81 8.19 37.16 0.30 -2.50 16 16 C -0.13 -2.47 6.01 37.16 0.22 -2.25 16 17 C -0.13 -1.92 5.49 -90.62 -0.50 -2.42 16 18 C -0.18 -2.53 9.51 -26.73 -0.25 -2.78 16 19 C -0.19 -2.42 9.31 -26.73 -0.25 -2.67 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.72 6.67 -51.93 -0.35 0.38 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.06 1.42 4.13 -51.93 -0.21 1.20 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.32 5.84 6.50 -39.29 -0.26 5.58 16 27 H 0.06 1.00 6.54 -51.93 -0.34 0.66 16 28 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.43 7.32 -51.93 -0.38 1.05 16 31 H 0.04 0.59 6.94 -51.93 -0.36 0.23 16 32 H 0.07 1.48 6.21 -51.93 -0.32 1.15 16 33 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.10 1.52 5.83 -51.93 -0.30 1.22 16 35 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.14 7.02 -51.93 -0.36 0.78 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -28.99 273.80 -6.86 -35.85 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.07 Total: 6.99 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -0.76 Total: -23.09 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.21 Total: -40.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.37 Total: 16.55 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.99 -6.86 -35.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.437 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds