Wall clock time and date at job start Sun Mar 29 2020 21:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53014 * 1 3 3 C 1.53001 * 109.46710 * 2 1 4 4 H 1.09001 * 109.46988 * 56.12550 * 3 2 1 5 5 C 1.50699 * 109.46551 * 176.12864 * 3 2 1 6 6 H 1.08002 * 119.99882 * 120.96807 * 5 3 2 7 7 C 1.37876 * 119.99858 * 300.96019 * 5 3 2 8 8 N 1.31516 * 119.99790 * 164.96067 * 7 5 3 9 9 Si 1.86798 * 120.00381 * 344.95995 * 7 5 3 10 10 H 1.48492 * 109.47235 * 264.61758 * 9 7 5 11 11 H 1.48507 * 109.46744 * 24.61411 * 9 7 5 12 12 H 1.48494 * 109.47126 * 144.61002 * 9 7 5 13 13 N 1.46900 * 109.47200 * 296.12575 * 3 2 1 14 14 C 1.46900 * 111.00117 * 142.46133 * 13 3 2 15 15 C 1.53007 * 109.46672 * 293.83058 * 14 13 3 16 16 C 1.52997 * 109.46889 * 53.82664 * 14 13 3 17 17 C 1.52992 * 109.47235 * 173.83263 * 14 13 3 18 18 C 1.53005 * 117.49501 * 243.61955 * 17 14 13 19 19 C 1.52998 * 60.00121 * 252.50777 * 18 17 14 20 20 H 1.08999 * 109.46559 * 306.10933 * 1 2 3 21 21 H 1.08995 * 109.47030 * 66.11158 * 1 2 3 22 22 H 1.09000 * 109.46666 * 186.11286 * 1 2 3 23 23 H 1.08991 * 109.46918 * 240.00176 * 2 1 3 24 24 H 1.08997 * 109.46738 * 119.99884 * 2 1 3 25 25 H 0.97003 * 120.00049 * 179.97438 * 8 7 5 26 26 H 1.00900 * 110.99960 * 18.50741 * 13 3 2 27 27 H 1.08998 * 109.47330 * 66.77176 * 15 14 13 28 28 H 1.09001 * 109.46586 * 186.76848 * 15 14 13 29 29 H 1.08994 * 109.46887 * 306.76256 * 15 14 13 30 30 H 1.08993 * 109.47178 * 56.97564 * 16 14 13 31 31 H 1.09007 * 109.47002 * 176.96741 * 16 14 13 32 32 H 1.08995 * 109.47550 * 296.96630 * 16 14 13 33 33 H 1.08999 * 115.55491 * 29.32335 * 17 14 13 34 34 H 1.08998 * 117.49917 * 0.02562 * 18 17 14 35 35 H 1.09008 * 117.49662 * 145.02222 * 18 17 14 36 36 H 1.08997 * 117.50056 * 252.51299 * 19 18 17 37 37 H 1.08999 * 117.49641 * 107.48754 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6211 1.9760 0.8532 5 6 3.5440 1.4436 0.0959 6 1 4.1343 1.9071 -0.6807 7 6 4.1663 0.8530 1.1752 8 7 5.4535 0.5874 1.1277 9 14 3.1813 0.4300 2.7050 10 1 3.3080 1.5294 3.6950 11 1 1.7524 0.2542 2.3407 12 1 3.7002 -0.8300 3.2952 13 7 1.6282 2.1075 -1.2435 14 6 1.2655 3.5093 -0.9957 15 6 0.0097 3.5645 -0.1234 16 6 2.4172 4.2146 -0.2768 17 6 0.9916 4.2085 -2.3287 18 6 1.9170 5.3606 -2.7252 19 6 0.4827 5.6505 -2.2786 20 1 -0.3632 0.6056 0.8303 21 1 -0.3633 0.4161 -0.9396 22 1 -0.3633 -1.0218 0.1094 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.8914 0.1722 1.8872 26 1 0.8695 1.6103 -1.6852 27 1 0.2388 3.1749 0.8685 28 1 -0.3288 4.5971 -0.0388 29 1 -0.7756 2.9609 -0.5784 30 1 3.3251 4.1286 -0.8738 31 1 2.1702 5.2676 -0.1410 32 1 2.5768 3.7504 0.6963 33 1 0.6137 3.5688 -3.1262 34 1 2.7211 5.6201 -2.0366 35 1 2.1481 5.4790 -3.7839 36 1 -0.2298 5.9595 -3.0433 37 1 0.3429 6.1010 -1.2959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233868827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:14 Heat of formation + Delta-G solvation = 7.520083 kcal Electronic energy + Delta-G solvation = -15173.525726 eV Core-core repulsion = 12950.964807 eV Total energy + Delta-G solvation = -2222.560919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30244 -37.51109 -34.50160 -33.58226 -30.28212 -29.10732 -27.89809 -24.78575 -23.87853 -22.94687 -21.28238 -19.47415 -18.73546 -17.46905 -16.70300 -16.02778 -15.58724 -15.20266 -14.77061 -14.50100 -14.09766 -13.82917 -13.52841 -13.21008 -13.03669 -12.73540 -12.65863 -12.44387 -12.17533 -12.15181 -11.89164 -11.64421 -11.42952 -11.15012 -11.14168 -10.91672 -10.67746 -10.53044 -8.84029 -8.20969 -6.14272 1.32128 1.37419 1.44904 2.38875 2.99498 3.11940 3.55438 3.92109 4.12443 4.27458 4.32213 4.36815 4.41062 4.48922 4.52592 4.62154 4.80836 4.82055 4.88277 4.92024 5.01878 5.10333 5.12969 5.15323 5.21867 5.29040 5.37451 5.41200 5.51165 5.60445 5.63537 5.86006 6.22267 6.73076 6.90810 7.06923 7.47155 8.96741 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.011027 C = 0.009653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.801032 B = 2538.607031 C = 2899.967550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.201 3.799 4 H 0.007 0.993 5 C -0.482 4.482 6 H 0.029 0.971 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.915 3.085 10 H -0.286 1.286 11 H -0.216 1.216 12 H -0.291 1.291 13 N -0.677 5.677 14 C 0.143 3.857 15 C -0.170 4.170 16 C -0.122 4.122 17 C -0.143 4.143 18 C -0.191 4.191 19 C -0.159 4.159 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.260 0.740 26 H 0.333 0.667 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.293 6.360 -3.475 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.092 3.908 4 H 0.025 0.975 5 C -0.521 4.521 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.740 3.260 10 H -0.213 1.213 11 H -0.139 1.139 12 H -0.217 1.217 13 N -0.309 5.309 14 C 0.052 3.948 15 C -0.229 4.229 16 C -0.180 4.180 17 C -0.161 4.161 18 C -0.228 4.228 19 C -0.197 4.197 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.152 0.848 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.517 6.423 -3.584 15.388 hybrid contribution -0.110 -0.562 1.280 1.402 sum -13.627 5.861 -2.304 15.012 Atomic orbital electron populations 1.21824 0.94773 1.01975 1.01675 1.22242 0.95970 0.98815 1.00940 1.19317 0.93093 0.90297 0.88105 0.97526 1.21278 0.91681 1.33772 1.05380 0.95308 1.25725 0.95596 0.95691 1.01748 1.70138 1.12440 1.44998 1.31652 0.86463 0.82415 0.77197 0.79926 1.21297 1.13887 1.21738 1.60501 1.42135 1.01701 1.26551 1.20345 0.92974 0.88676 0.92811 1.22499 0.97927 1.02852 0.99588 1.21823 0.97837 0.98694 0.99602 1.22154 1.05151 0.90911 0.97901 1.23112 0.94344 1.03458 1.01871 1.23026 0.96538 0.96917 1.03172 0.93286 0.91626 0.91804 0.93025 0.93459 0.93126 0.84765 0.94046 0.90846 0.91745 0.94412 0.91877 0.94476 0.87819 0.89475 0.88536 0.87156 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.66 71.99 0.70 -3.74 16 2 C -0.14 -5.78 4.60 30.60 0.14 -5.64 16 3 C 0.20 9.05 0.82 44.17 0.04 9.08 16 4 H 0.01 0.33 4.19 -2.39 -0.01 0.32 16 5 C -0.48 -27.50 7.71 25.60 0.20 -27.30 16 6 H 0.03 1.89 7.95 -2.91 -0.02 1.86 16 7 C 0.01 0.49 5.33 84.65 0.45 0.94 16 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 9 Si 0.91 43.75 25.69 68.60 1.76 45.52 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.22 -9.14 5.21 99.48 0.52 -8.63 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 N -0.68 -26.60 5.94 -452.10 -2.68 -29.28 16 14 C 0.14 4.79 0.80 3.53 0.00 4.80 16 15 C -0.17 -4.85 8.19 71.98 0.59 -4.26 16 16 C -0.12 -4.69 6.01 71.98 0.43 -4.25 16 17 C -0.14 -4.00 5.49 -10.79 -0.06 -4.05 16 18 C -0.19 -5.09 9.51 30.60 0.29 -4.80 16 19 C -0.16 -3.49 9.31 30.60 0.28 -3.21 16 20 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.75 6.67 -2.39 -0.02 1.74 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.05 2.05 4.13 -2.39 -0.01 2.04 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 26 H 0.33 11.44 6.50 -89.69 -0.58 10.86 16 27 H 0.04 1.31 6.54 -2.39 -0.02 1.30 16 28 H 0.07 1.78 6.75 -2.39 -0.02 1.76 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.64 7.32 -2.39 -0.02 1.62 16 31 H 0.06 2.01 6.94 -2.38 -0.02 1.99 16 32 H 0.04 1.62 6.21 -2.39 -0.01 1.60 16 33 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.09 2.57 5.83 -2.39 -0.01 2.56 16 35 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.03 7.02 -2.39 -0.02 2.01 16 Total: -1.00 -65.60 273.80 2.71 -62.89 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.27 Total: 23.65 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 3.06 Total: -42.43 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.38 Total: -89.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.76 Total: 45.52 kcal Total: -65.60 2.71 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.406 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds