Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.53929 * 2 1 4 4 C 1.54895 * 110.48589 * 237.39079 * 2 1 3 5 5 C 1.54961 * 102.77671 * 203.40346 * 4 2 1 6 6 C 1.53002 * 110.47622 * 279.23249 * 5 4 2 7 7 C 1.53004 * 110.53009 * 156.56398 * 5 4 2 8 8 C 1.54270 * 104.16191 * 37.88526 * 5 4 2 9 9 C 1.53869 * 106.63967 * 336.44607 * 8 5 4 10 10 H 1.08996 * 110.03529 * 240.68999 * 9 8 5 11 11 N 1.46898 * 110.03515 * 119.25636 * 9 8 5 12 12 C 1.46902 * 110.99589 * 86.45340 * 11 9 8 13 13 C 1.50706 * 109.46978 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00219 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99881 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47095 * 90.00140 * 17 15 13 19 19 H 1.48501 * 109.46985 * 209.99647 * 17 15 13 20 20 H 1.48493 * 109.47070 * 330.00002 * 17 15 13 21 21 H 1.08996 * 109.46717 * 297.38229 * 1 2 3 22 22 H 1.08994 * 109.47502 * 57.38602 * 1 2 3 23 23 H 1.08997 * 109.46666 * 177.38882 * 1 2 3 24 24 H 1.09001 * 110.75082 * 321.68881 * 4 2 1 25 25 H 1.08991 * 110.75596 * 84.87571 * 4 2 1 26 26 H 1.09004 * 109.46820 * 174.72803 * 6 5 4 27 27 H 1.09003 * 109.47142 * 294.72458 * 6 5 4 28 28 H 1.08992 * 109.47046 * 54.72646 * 6 5 4 29 29 H 1.08999 * 109.46898 * 305.24156 * 7 5 4 30 30 H 1.09004 * 109.46652 * 65.24228 * 7 5 4 31 31 H 1.08998 * 109.46754 * 185.23955 * 7 5 4 32 32 H 1.09002 * 110.03399 * 217.13605 * 8 5 4 33 33 H 1.08995 * 110.02943 * 95.75505 * 8 5 4 34 34 H 1.00892 * 111.00452 * 210.40612 * 11 9 8 35 35 H 1.09003 * 109.47425 * 300.00295 * 12 11 9 36 36 H 1.09000 * 109.47268 * 60.00296 * 12 11 9 37 37 H 0.97001 * 120.00041 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4913 -1.1990 -0.7603 6 6 4.4731 -0.0384 -0.9332 7 6 3.9694 -2.4270 -1.5379 8 6 3.3166 -1.5405 0.7340 9 6 2.0701 -0.7789 1.2172 10 1 2.3413 -0.0858 2.0135 11 7 1.0561 -1.7268 1.6981 12 6 1.2760 -2.0606 3.1117 13 6 0.2195 -3.0334 3.5683 14 1 -0.5391 -3.3704 2.8775 15 6 0.2220 -3.4941 4.8679 16 7 -0.7003 -4.3427 5.2666 17 14 1.5346 -2.9118 6.0627 18 1 1.0620 -1.6887 6.7598 19 1 1.8033 -3.9779 7.0610 20 1 2.7819 -2.6060 5.3173 21 1 -0.3632 0.4726 0.9125 22 1 -0.3634 0.5538 -0.8656 23 1 -0.3632 -1.0266 -0.0468 24 1 1.4580 -1.6600 -1.4223 25 1 2.1220 -0.1390 -2.1009 26 1 5.4417 -0.3170 -0.5180 27 1 4.5841 0.1888 -1.9935 28 1 4.0930 0.8398 -0.4113 29 1 3.2354 -3.2269 -1.4407 30 1 4.0871 -2.1676 -2.5900 31 1 4.9262 -2.7610 -1.1367 32 1 4.1929 -1.2170 1.2958 33 1 3.1697 -2.6134 0.8570 34 1 0.1254 -1.3656 1.5524 35 1 2.2609 -2.5126 3.2294 36 1 1.2187 -1.1529 3.7125 37 1 -0.6987 -4.6664 6.1809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235291072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = -20.619612 kcal Electronic energy + Delta-G solvation = -14701.210467 eV Core-core repulsion = 12477.429319 eV Total energy + Delta-G solvation = -2223.781148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32250 -34.99613 -32.86056 -31.60146 -28.79851 -27.23232 -26.83567 -25.68104 -22.99258 -21.21003 -18.96044 -18.38569 -16.68771 -15.63137 -14.95361 -14.41929 -14.13253 -13.89362 -13.49958 -13.12020 -12.53086 -12.45924 -12.42861 -12.06255 -11.82438 -11.41262 -11.34731 -11.04753 -10.83996 -10.52275 -10.36155 -10.30247 -10.29804 -10.07060 -9.93203 -9.67429 -9.18450 -8.57335 -7.37875 -6.03539 -4.00831 3.29772 3.37249 3.41038 4.44377 4.69178 4.83827 4.93352 5.27015 5.31313 5.32555 5.45446 5.51480 5.63831 5.73905 5.80631 5.85582 5.93865 5.94956 6.02308 6.13029 6.18178 6.20760 6.32054 6.33976 6.47732 6.51194 6.60439 6.66403 6.80175 6.90650 7.08605 7.68670 8.00054 8.45311 8.70754 9.04815 9.59252 11.09868 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038683 B = 0.007910 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.661326 B = 3538.780246 C = 3791.544981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.101 4.101 5 C -0.070 4.070 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.105 4.105 9 C 0.083 3.917 10 H 0.032 0.968 11 N -0.677 5.677 12 C 0.163 3.837 13 C -0.514 4.514 14 H 0.078 0.922 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.339 0.661 35 H 0.025 0.975 36 H -0.024 1.024 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 8.890 -12.020 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.138 4.138 5 C -0.071 4.071 6 C -0.192 4.192 7 C -0.193 4.193 8 C -0.143 4.143 9 C -0.028 4.028 10 H 0.049 0.951 11 N -0.312 5.312 12 C 0.035 3.965 13 C -0.552 4.552 14 H 0.096 0.904 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.043 0.957 36 H -0.006 1.006 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.299 8.229 -12.080 16.808 hybrid contribution 0.403 1.062 1.330 1.749 sum 8.701 9.291 -10.749 16.661 Atomic orbital electron populations 1.21817 0.95262 1.02840 1.01010 1.22075 0.95612 0.98261 0.95506 0.91468 1.22576 0.95253 0.99637 0.96379 1.21358 0.94950 0.94915 0.95843 1.21825 0.98569 0.97998 1.00839 1.21802 1.01052 0.97449 0.98983 1.22343 0.96420 1.02053 0.93459 1.22083 0.93437 0.92384 0.94873 0.95050 1.60770 1.05366 1.43595 1.21436 1.20028 0.97890 0.94568 0.83996 1.21089 1.12392 1.25100 0.96632 0.90375 1.24908 0.95612 0.94799 0.98044 1.69902 1.34207 1.32202 1.17765 0.86828 0.82999 0.78517 0.81199 1.20425 1.21185 1.19145 0.92815 0.93082 0.90729 0.90878 0.92544 0.93022 0.93189 0.92763 0.92189 0.93316 0.93072 0.92965 0.90132 0.83911 0.95730 1.00600 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 7.90 37.16 0.29 -1.80 16 2 C -0.10 -1.35 3.08 -88.96 -0.27 -1.62 16 3 H 0.07 0.87 7.64 -51.93 -0.40 0.48 16 4 C -0.10 -1.31 5.23 -24.70 -0.13 -1.44 16 5 C -0.07 -0.92 0.90 -152.80 -0.14 -1.06 16 6 C -0.14 -1.52 8.41 37.16 0.31 -1.20 16 7 C -0.14 -1.64 8.47 37.16 0.31 -1.32 16 8 C -0.10 -1.68 5.61 -25.61 -0.14 -1.83 16 9 C 0.08 1.44 3.15 -66.60 -0.21 1.23 16 10 H 0.03 0.57 7.83 -51.93 -0.41 0.17 16 11 N -0.68 -14.24 5.93 -106.81 -0.63 -14.88 16 12 C 0.16 4.07 4.33 -4.97 -0.02 4.05 16 13 C -0.51 -14.98 9.87 -34.44 -0.34 -15.32 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 17 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 21 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.12 6.79 -51.93 -0.35 0.77 16 24 H 0.07 1.03 7.94 -51.93 -0.41 0.61 16 25 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.61 7.33 -51.93 -0.38 0.23 16 29 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 33 H 0.08 1.48 7.61 -51.93 -0.40 1.08 16 34 H 0.34 6.90 5.31 -39.30 -0.21 6.69 16 35 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 36 H -0.02 -0.59 7.50 -51.93 -0.39 -0.98 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -30.21 284.62 -7.35 -37.56 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.67 Total: 1.35 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.43 Total: -18.40 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.14 Total: -42.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.21 -7.35 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235291072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.942 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds