Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.53929 * 2 1 4 4 C 1.54895 * 110.48589 * 237.39079 * 2 1 3 5 5 C 1.54961 * 102.77671 * 203.40346 * 4 2 1 6 6 C 1.53002 * 110.47622 * 279.23249 * 5 4 2 7 7 C 1.53004 * 110.53009 * 156.56398 * 5 4 2 8 8 C 1.54270 * 104.16191 * 37.88526 * 5 4 2 9 9 C 1.53869 * 106.63967 * 336.44607 * 8 5 4 10 10 H 1.08996 * 110.03529 * 240.68999 * 9 8 5 11 11 N 1.46898 * 110.03515 * 119.25636 * 9 8 5 12 12 C 1.46902 * 110.99589 * 86.45340 * 11 9 8 13 13 C 1.50706 * 109.46978 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00219 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99881 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47095 * 90.00140 * 17 15 13 19 19 H 1.48501 * 109.46985 * 209.99647 * 17 15 13 20 20 H 1.48493 * 109.47070 * 330.00002 * 17 15 13 21 21 H 1.08996 * 109.46717 * 297.38229 * 1 2 3 22 22 H 1.08994 * 109.47502 * 57.38602 * 1 2 3 23 23 H 1.08997 * 109.46666 * 177.38882 * 1 2 3 24 24 H 1.09001 * 110.75082 * 321.68881 * 4 2 1 25 25 H 1.08991 * 110.75596 * 84.87571 * 4 2 1 26 26 H 1.09004 * 109.46820 * 174.72803 * 6 5 4 27 27 H 1.09003 * 109.47142 * 294.72458 * 6 5 4 28 28 H 1.08992 * 109.47046 * 54.72646 * 6 5 4 29 29 H 1.08999 * 109.46898 * 305.24156 * 7 5 4 30 30 H 1.09004 * 109.46652 * 65.24228 * 7 5 4 31 31 H 1.08998 * 109.46754 * 185.23955 * 7 5 4 32 32 H 1.09002 * 110.03399 * 217.13605 * 8 5 4 33 33 H 1.08995 * 110.02943 * 95.75505 * 8 5 4 34 34 H 1.00892 * 111.00452 * 210.40612 * 11 9 8 35 35 H 1.09003 * 109.47425 * 300.00295 * 12 11 9 36 36 H 1.09000 * 109.47268 * 60.00296 * 12 11 9 37 37 H 0.97001 * 120.00041 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4913 -1.1990 -0.7603 6 6 4.4731 -0.0384 -0.9332 7 6 3.9694 -2.4270 -1.5379 8 6 3.3166 -1.5405 0.7340 9 6 2.0701 -0.7789 1.2172 10 1 2.3413 -0.0858 2.0135 11 7 1.0561 -1.7268 1.6981 12 6 1.2760 -2.0606 3.1117 13 6 0.2195 -3.0334 3.5683 14 1 -0.5391 -3.3704 2.8775 15 6 0.2220 -3.4941 4.8679 16 7 -0.7003 -4.3427 5.2666 17 14 1.5346 -2.9118 6.0627 18 1 1.0620 -1.6887 6.7598 19 1 1.8033 -3.9779 7.0610 20 1 2.7819 -2.6060 5.3173 21 1 -0.3632 0.4726 0.9125 22 1 -0.3634 0.5538 -0.8656 23 1 -0.3632 -1.0266 -0.0468 24 1 1.4580 -1.6600 -1.4223 25 1 2.1220 -0.1390 -2.1009 26 1 5.4417 -0.3170 -0.5180 27 1 4.5841 0.1888 -1.9935 28 1 4.0930 0.8398 -0.4113 29 1 3.2354 -3.2269 -1.4407 30 1 4.0871 -2.1676 -2.5900 31 1 4.9262 -2.7610 -1.1367 32 1 4.1929 -1.2170 1.2958 33 1 3.1697 -2.6134 0.8570 34 1 0.1254 -1.3656 1.5524 35 1 2.2609 -2.5126 3.2294 36 1 1.2187 -1.1529 3.7125 37 1 -0.6987 -4.6664 6.1809 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235291072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = -39.688430 kcal Electronic energy + Delta-G solvation = -14702.037353 eV Core-core repulsion = 12477.429319 eV Total energy + Delta-G solvation = -2224.608034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53498 -36.55428 -34.72780 -33.22036 -30.30248 -28.49756 -28.04066 -27.03878 -24.32576 -23.17081 -20.25811 -19.54269 -18.82388 -17.07625 -16.54802 -16.00684 -15.60345 -15.00953 -14.93123 -14.53083 -14.29060 -14.05860 -13.51649 -13.32149 -13.18052 -12.73636 -12.66246 -12.53495 -12.36856 -11.99276 -11.83200 -11.62347 -11.49975 -11.43540 -11.36355 -11.10746 -11.06040 -10.83664 -9.08983 -8.32737 -6.36819 1.30600 1.33004 1.44668 2.31222 3.01038 3.52610 3.56500 3.76492 4.03013 4.24881 4.36763 4.46626 4.50221 4.64594 4.74856 4.76769 4.82153 4.87214 4.90180 4.98410 5.02177 5.05859 5.16580 5.19654 5.22430 5.25630 5.32231 5.45004 5.47856 5.52132 5.55606 5.71513 6.00702 6.59542 6.67621 6.82651 7.28608 8.84063 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038683 B = 0.007910 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.661326 B = 3538.780246 C = 3791.544981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.134 4.134 8 C -0.106 4.106 9 C 0.075 3.925 10 H 0.025 0.975 11 N -0.684 5.684 12 C 0.176 3.824 13 C -0.528 4.528 14 H 0.037 0.963 15 C 0.009 3.991 16 N -0.946 5.946 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.254 1.254 21 H 0.045 0.955 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.340 0.660 35 H 0.019 0.981 36 H -0.021 1.021 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.888 10.842 -12.885 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.134 4.134 5 C -0.067 4.067 6 C -0.188 4.188 7 C -0.191 4.191 8 C -0.144 4.144 9 C -0.035 4.035 10 H 0.043 0.957 11 N -0.319 5.319 12 C 0.048 3.952 13 C -0.566 4.566 14 H 0.055 0.945 15 C -0.189 4.189 16 N -0.586 5.586 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.178 1.178 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.163 0.837 35 H 0.037 0.963 36 H -0.004 1.004 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.152 10.191 -12.968 19.367 hybrid contribution -0.248 0.411 1.540 1.613 sum 9.904 10.602 -11.429 18.469 Atomic orbital electron populations 1.21783 0.95224 1.01898 1.01870 1.22088 0.95626 0.98928 0.94190 0.89290 1.22557 0.94749 0.99323 0.96800 1.21361 0.95739 0.96172 0.93398 1.21789 0.97926 0.96869 1.02222 1.21783 1.00587 0.96570 1.00193 1.22343 0.95943 0.99933 0.96209 1.22273 0.93053 0.92063 0.96103 0.95692 1.60700 1.06584 1.45626 1.19015 1.19738 0.95848 0.93395 0.86252 1.21350 1.12682 1.26130 0.96418 0.94463 1.25864 0.98114 0.94753 1.00124 1.70048 1.36346 1.33631 1.18624 0.85678 0.80031 0.78476 0.78525 1.19069 1.20322 1.17805 0.93560 0.90403 0.92746 0.92488 0.89855 0.92717 0.91251 0.92608 0.93934 0.91196 0.92786 0.92492 0.93111 0.83743 0.96284 1.00362 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 7.90 71.98 0.57 -3.37 16 2 C -0.09 -2.34 3.08 -9.72 -0.03 -2.37 16 3 H 0.09 1.99 7.64 -2.39 -0.02 1.97 16 4 C -0.10 -2.28 5.23 31.91 0.17 -2.11 16 5 C -0.07 -1.58 0.90 -51.08 -0.05 -1.63 16 6 C -0.13 -2.47 8.41 71.98 0.61 -1.86 16 7 C -0.13 -2.99 8.47 71.98 0.61 -2.38 16 8 C -0.11 -3.33 5.61 31.32 0.18 -3.15 16 9 C 0.08 2.55 3.15 45.64 0.14 2.69 16 10 H 0.03 0.88 7.83 -2.39 -0.02 0.86 16 11 N -0.68 -29.25 5.93 -491.83 -2.92 -32.17 16 12 C 0.18 8.89 4.33 85.56 0.37 9.26 16 13 C -0.53 -31.72 9.87 25.60 0.25 -31.47 16 14 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 15 C 0.01 0.54 5.47 84.66 0.46 1.01 16 16 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 17 Si 0.95 45.48 27.47 68.60 1.88 47.36 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 21 H 0.05 1.26 7.88 -2.39 -0.02 1.25 16 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.64 6.79 -2.39 -0.02 1.63 16 24 H 0.06 1.53 7.94 -2.39 -0.02 1.51 16 25 H 0.08 1.55 8.06 -2.39 -0.02 1.53 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.04 7.33 -2.39 -0.02 1.02 16 29 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.69 7.85 -2.39 -0.02 1.68 16 33 H 0.05 1.88 7.61 -2.39 -0.02 1.87 16 34 H 0.34 14.22 5.31 -89.70 -0.48 13.74 16 35 H 0.02 0.98 7.15 -2.39 -0.02 0.96 16 36 H -0.02 -1.05 7.50 -2.39 -0.02 -1.07 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -66.20 284.62 3.02 -63.18 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.48 Total: 17.03 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 3.28 Total: -35.40 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.62 Total: -92.18 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -66.20 3.02 -63.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235291072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.493 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds