Wall clock time and date at job start Sun Mar 29 2020 21:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.81570 * 2 1 4 4 C 1.54888 * 110.76041 * 236.66280 * 2 1 3 5 5 C 1.54265 * 104.19721 * 203.73967 * 4 2 1 6 6 C 1.53000 * 110.03372 * 264.32407 * 5 4 2 7 7 C 1.53004 * 110.06971 * 142.91617 * 5 4 2 8 8 C 1.53873 * 106.59997 * 23.61451 * 5 4 2 9 9 C 1.54268 * 106.59703 * 359.97438 * 8 5 4 10 10 H 1.09002 * 110.48435 * 95.07241 * 9 8 5 11 11 N 1.46897 * 110.48570 * 217.58208 * 9 8 5 12 12 C 1.46897 * 111.00381 * 271.75858 * 11 9 8 13 13 C 1.50700 * 109.47586 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00195 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46688 * 60.00226 * 17 15 13 19 19 H 1.48502 * 109.47078 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47392 * 300.00451 * 17 15 13 21 21 H 1.09002 * 109.47532 * 296.66219 * 1 2 3 22 22 H 1.08998 * 109.47440 * 56.66878 * 1 2 3 23 23 H 1.09000 * 109.47038 * 176.66872 * 1 2 3 24 24 H 1.09007 * 110.48520 * 85.06115 * 4 2 1 25 25 H 1.08996 * 110.48377 * 322.42528 * 4 2 1 26 26 H 1.09001 * 109.46895 * 177.16841 * 6 5 4 27 27 H 1.08997 * 109.46774 * 297.16690 * 6 5 4 28 28 H 1.08993 * 109.46859 * 57.17082 * 6 5 4 29 29 H 1.09001 * 109.47296 * 302.81244 * 7 5 4 30 30 H 1.09000 * 109.47108 * 62.81325 * 7 5 4 31 31 H 1.09003 * 109.47196 * 182.81016 * 7 5 4 32 32 H 1.09002 * 110.03017 * 240.71676 * 8 5 4 33 33 H 1.08996 * 110.07624 * 119.30418 * 8 5 4 34 34 H 1.00898 * 111.00129 * 147.80543 * 11 9 8 35 35 H 1.09003 * 109.47259 * 300.00169 * 12 11 9 36 36 H 1.09004 * 109.46863 * 59.99818 * 12 11 9 37 37 H 0.96996 * 120.00451 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0790 -0.7959 -1.2100 5 6 3.4932 -1.2267 -0.7693 6 6 4.5311 -0.2323 -1.2934 7 6 3.8016 -2.6307 -1.2934 8 6 3.4931 -1.2268 0.7694 9 6 2.0791 -0.7954 1.2101 10 1 1.4573 -1.6691 1.4055 11 7 2.1506 0.0602 2.4021 12 6 2.1297 -0.7453 3.6303 13 6 2.2038 0.1647 4.8293 14 1 2.2612 1.2345 4.6925 15 6 2.1994 -0.3684 6.1007 16 7 2.1310 -1.6712 6.2674 17 14 2.2920 0.7596 7.5868 18 1 1.1286 1.6827 7.5808 19 1 2.2719 -0.0548 8.8285 20 1 3.5494 1.5476 7.5326 21 1 -0.3634 0.4611 0.9184 22 1 -0.3634 0.5647 -0.8586 23 1 -0.3633 -1.0259 -0.0597 24 1 2.1320 -0.1592 -2.0931 25 1 1.4575 -1.6698 -1.4054 26 1 5.5204 -0.5171 -0.9351 27 1 4.5234 -0.2398 -2.3833 28 1 4.2890 0.7682 -0.9351 29 1 3.0433 -3.3270 -0.9351 30 1 3.7994 -2.6203 -2.3833 31 1 4.7819 -2.9451 -0.9351 32 1 4.2326 -0.5183 1.1428 33 1 3.7124 -2.2268 1.1436 34 1 1.4062 0.7412 2.4036 35 1 1.2064 -1.3234 3.6700 36 1 2.9833 -1.4232 3.6349 37 1 2.1275 -2.0463 7.1619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235299764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:14 Heat of formation + Delta-G solvation = -34.860988 kcal Electronic energy + Delta-G solvation = -14517.314065 eV Core-core repulsion = 12292.915364 eV Total energy + Delta-G solvation = -2224.398701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.12857 -34.80907 -32.93006 -31.70187 -28.43919 -27.16502 -26.51532 -25.69034 -22.76993 -21.04740 -19.54264 -18.41427 -16.35775 -15.43987 -14.62632 -14.40796 -13.85746 -13.59049 -13.42540 -13.25670 -12.76415 -12.40796 -12.30343 -12.08190 -11.59144 -11.36599 -11.20980 -11.11227 -10.76447 -10.57303 -10.49357 -10.24624 -10.20159 -10.09322 -9.96678 -9.64855 -9.08987 -8.44212 -7.21273 -5.99481 -4.01328 3.35513 3.39156 3.42458 4.45817 4.76199 4.90402 4.93187 5.30519 5.36155 5.43054 5.50110 5.56162 5.74611 5.75441 5.84264 5.92325 5.94299 5.97597 5.99813 6.14220 6.21886 6.22604 6.32939 6.38718 6.49940 6.56868 6.69926 6.74936 6.88146 7.36919 7.48936 7.84279 8.19837 8.48911 8.70143 9.08459 9.63447 11.11614 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042745 B = 0.006811 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.882500 B = 4109.893380 C = 4336.480350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.106 4.106 5 C -0.071 4.071 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.088 3.912 10 H 0.038 0.962 11 N -0.683 5.683 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.327 0.673 35 H -0.016 1.016 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 0.850 -14.723 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.144 4.144 5 C -0.071 4.071 6 C -0.191 4.191 7 C -0.195 4.195 8 C -0.142 4.142 9 C -0.023 4.023 10 H 0.056 0.944 11 N -0.313 5.313 12 C 0.069 3.931 13 C -0.553 4.553 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.002 0.998 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.026 0.743 -14.577 14.632 hybrid contribution -0.864 0.134 0.989 1.320 sum 0.162 0.877 -13.588 13.617 Atomic orbital electron populations 1.21772 0.95556 1.01425 1.01394 1.22249 0.94741 0.99815 0.95000 0.90140 1.22472 0.95404 0.99282 0.97278 1.21158 0.94971 0.94871 0.96116 1.21873 0.98371 0.99198 0.99703 1.21913 1.01355 0.96145 1.00051 1.22290 0.98259 1.01248 0.92398 1.22326 0.94960 0.94587 0.90427 0.94448 1.60745 1.51212 1.17317 1.02065 1.19558 0.95406 0.92703 0.85476 1.21182 1.50040 0.93657 0.90382 0.92086 1.24990 0.95418 0.95079 0.99101 1.69956 1.50895 1.10543 1.22435 0.86557 0.78653 0.80456 0.81696 1.20294 1.21364 1.20180 0.92538 0.93103 0.92996 0.92165 0.91896 0.92912 0.93444 0.92415 0.92767 0.93281 0.92865 0.90572 0.92585 0.85575 0.99826 0.95503 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.26 37.15 0.34 -1.59 16 2 C -0.10 -1.46 2.89 -88.64 -0.26 -1.71 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.11 -1.36 5.35 -25.07 -0.13 -1.49 16 5 C -0.07 -0.95 0.94 -153.39 -0.14 -1.09 16 6 C -0.13 -1.63 8.14 37.16 0.30 -1.33 16 7 C -0.14 -1.64 8.17 37.16 0.30 -1.34 16 8 C -0.10 -1.76 5.81 -25.61 -0.15 -1.91 16 9 C 0.09 1.60 2.62 -66.06 -0.17 1.43 16 10 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 11 N -0.68 -14.98 6.29 -106.25 -0.67 -15.65 16 12 C 0.20 5.25 5.29 -4.98 -0.03 5.22 16 13 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.06 0.69 7.84 -51.92 -0.41 0.28 16 25 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.41 7.57 -51.93 -0.39 1.02 16 33 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 34 H 0.33 6.90 8.15 -39.29 -0.32 6.58 16 35 H -0.02 -0.46 8.08 -51.93 -0.42 -0.88 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -29.72 293.80 -7.79 -37.52 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.92 Total: 0.79 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.35 Total: -17.49 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.07 Total: -42.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.72 -7.79 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235299764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.655 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds