Wall clock time and date at job start Sun Mar 29 2020 21:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.81570 * 2 1 4 4 C 1.54888 * 110.76041 * 236.66280 * 2 1 3 5 5 C 1.54265 * 104.19721 * 203.73967 * 4 2 1 6 6 C 1.53000 * 110.03372 * 264.32407 * 5 4 2 7 7 C 1.53004 * 110.06971 * 142.91617 * 5 4 2 8 8 C 1.53873 * 106.59997 * 23.61451 * 5 4 2 9 9 C 1.54268 * 106.59703 * 359.97438 * 8 5 4 10 10 H 1.09002 * 110.48435 * 95.07241 * 9 8 5 11 11 N 1.46897 * 110.48570 * 217.58208 * 9 8 5 12 12 C 1.46897 * 111.00381 * 271.75858 * 11 9 8 13 13 C 1.50700 * 109.47586 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00195 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46688 * 60.00226 * 17 15 13 19 19 H 1.48502 * 109.47078 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47392 * 300.00451 * 17 15 13 21 21 H 1.09002 * 109.47532 * 296.66219 * 1 2 3 22 22 H 1.08998 * 109.47440 * 56.66878 * 1 2 3 23 23 H 1.09000 * 109.47038 * 176.66872 * 1 2 3 24 24 H 1.09007 * 110.48520 * 85.06115 * 4 2 1 25 25 H 1.08996 * 110.48377 * 322.42528 * 4 2 1 26 26 H 1.09001 * 109.46895 * 177.16841 * 6 5 4 27 27 H 1.08997 * 109.46774 * 297.16690 * 6 5 4 28 28 H 1.08993 * 109.46859 * 57.17082 * 6 5 4 29 29 H 1.09001 * 109.47296 * 302.81244 * 7 5 4 30 30 H 1.09000 * 109.47108 * 62.81325 * 7 5 4 31 31 H 1.09003 * 109.47196 * 182.81016 * 7 5 4 32 32 H 1.09002 * 110.03017 * 240.71676 * 8 5 4 33 33 H 1.08996 * 110.07624 * 119.30418 * 8 5 4 34 34 H 1.00898 * 111.00129 * 147.80543 * 11 9 8 35 35 H 1.09003 * 109.47259 * 300.00169 * 12 11 9 36 36 H 1.09004 * 109.46863 * 59.99818 * 12 11 9 37 37 H 0.96996 * 120.00451 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0790 -0.7959 -1.2100 5 6 3.4932 -1.2267 -0.7693 6 6 4.5311 -0.2323 -1.2934 7 6 3.8016 -2.6307 -1.2934 8 6 3.4931 -1.2268 0.7694 9 6 2.0791 -0.7954 1.2101 10 1 1.4573 -1.6691 1.4055 11 7 2.1506 0.0602 2.4021 12 6 2.1297 -0.7453 3.6303 13 6 2.2038 0.1647 4.8293 14 1 2.2612 1.2345 4.6925 15 6 2.1994 -0.3684 6.1007 16 7 2.1310 -1.6712 6.2674 17 14 2.2920 0.7596 7.5868 18 1 1.1286 1.6827 7.5808 19 1 2.2719 -0.0548 8.8285 20 1 3.5494 1.5476 7.5326 21 1 -0.3634 0.4611 0.9184 22 1 -0.3634 0.5647 -0.8586 23 1 -0.3633 -1.0259 -0.0597 24 1 2.1320 -0.1592 -2.0931 25 1 1.4575 -1.6698 -1.4054 26 1 5.5204 -0.5171 -0.9351 27 1 4.5234 -0.2398 -2.3833 28 1 4.2890 0.7682 -0.9351 29 1 3.0433 -3.3270 -0.9351 30 1 3.7994 -2.6203 -2.3833 31 1 4.7819 -2.9451 -0.9351 32 1 4.2326 -0.5183 1.1428 33 1 3.7124 -2.2268 1.1436 34 1 1.4062 0.7412 2.4036 35 1 1.2064 -1.3234 3.6700 36 1 2.9833 -1.4232 3.6349 37 1 2.1275 -2.0463 7.1619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235299764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:13 Heat of formation + Delta-G solvation = -53.173725 kcal Electronic energy + Delta-G solvation = -14518.108165 eV Core-core repulsion = 12292.915364 eV Total energy + Delta-G solvation = -2225.192800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39681 -36.53262 -34.70437 -33.34074 -30.03741 -28.12446 -28.03840 -27.18840 -24.51647 -22.78590 -20.90701 -19.59055 -18.51466 -16.89357 -16.68371 -15.67862 -15.38578 -15.00140 -14.72317 -14.56865 -14.15361 -13.86378 -13.66203 -13.58037 -13.12323 -12.84458 -12.68031 -12.59277 -12.31413 -12.21354 -11.96661 -11.72575 -11.46154 -11.36312 -11.29366 -11.15809 -11.03423 -10.66852 -9.10979 -8.23830 -6.35915 1.39399 1.43679 1.51709 2.38860 3.08930 3.50355 3.62215 3.75651 4.00088 4.27569 4.33649 4.40985 4.54372 4.61299 4.75008 4.75925 4.86113 4.87172 4.97359 5.01196 5.05311 5.10654 5.17800 5.18527 5.24912 5.26744 5.32699 5.41331 5.47816 5.53588 5.64578 5.65904 6.03266 6.48490 6.74778 6.90162 7.35472 8.87774 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042745 B = 0.006811 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.882500 B = 4109.893380 C = 4336.480350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.099 4.099 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.135 4.135 8 C -0.103 4.103 9 C 0.079 3.921 10 H 0.017 0.983 11 N -0.680 5.680 12 C 0.214 3.786 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.268 1.268 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.333 0.667 35 H -0.046 1.046 36 H -0.005 1.005 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 2.119 -16.099 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.136 4.136 5 C -0.067 4.067 6 C -0.189 4.189 7 C -0.193 4.193 8 C -0.142 4.142 9 C -0.031 4.031 10 H 0.035 0.965 11 N -0.310 5.310 12 C 0.086 3.914 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.060 0.940 22 H 0.097 0.903 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.150 0.850 35 H -0.028 1.028 36 H 0.013 0.987 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.940 2.020 -15.980 16.134 hybrid contribution -0.830 -0.306 1.400 1.656 sum 0.110 1.714 -14.579 14.680 Atomic orbital electron populations 1.21763 0.94464 1.01780 1.01912 1.22201 0.95621 0.99385 0.93763 0.90093 1.22465 0.94512 0.99641 0.97022 1.21143 0.96229 0.96466 0.92883 1.21847 0.97618 0.98171 1.01217 1.21891 1.01024 0.94817 1.01527 1.22281 0.96685 0.99473 0.95750 1.22495 0.95979 0.94090 0.90525 0.96539 1.60650 1.51426 1.17310 1.01609 1.19158 0.92440 0.92190 0.87642 1.21546 1.50582 0.94043 0.91465 0.91710 1.26002 0.94489 0.96755 1.02571 1.70096 1.51362 1.12635 1.23464 0.85351 0.79218 0.78293 0.77217 1.18937 1.20678 1.19291 0.94010 0.90286 0.93049 0.89494 0.91203 0.93207 0.90896 0.93128 0.93436 0.90799 0.93071 0.92517 0.94385 0.84996 1.02805 0.98723 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.26 71.98 0.67 -2.93 16 2 C -0.09 -2.55 2.89 -9.51 -0.03 -2.58 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.10 -2.25 5.35 31.67 0.17 -2.08 16 5 C -0.07 -1.68 0.94 -51.46 -0.05 -1.73 16 6 C -0.13 -2.90 8.14 71.98 0.59 -2.31 16 7 C -0.14 -2.99 8.17 71.98 0.59 -2.40 16 8 C -0.10 -3.61 5.81 31.32 0.18 -3.43 16 9 C 0.08 2.98 2.62 45.99 0.12 3.10 16 10 H 0.02 0.69 7.75 -2.39 -0.02 0.67 16 11 N -0.68 -30.87 6.29 -490.06 -3.08 -33.96 16 12 C 0.21 12.07 5.29 85.56 0.45 12.52 16 13 C -0.54 -31.85 9.32 25.60 0.24 -31.61 16 14 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 16 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 17 Si 0.98 45.24 29.54 68.60 2.03 47.27 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H 0.04 1.17 7.87 -2.39 -0.02 1.15 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.30 8.09 -2.39 -0.02 1.28 16 24 H 0.09 1.60 7.84 -2.38 -0.02 1.58 16 25 H 0.07 1.53 7.71 -2.39 -0.02 1.51 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 2.17 7.57 -2.39 -0.02 2.15 16 33 H 0.04 1.41 7.67 -2.39 -0.02 1.40 16 34 H 0.33 14.34 8.15 -89.70 -0.73 13.61 16 35 H -0.05 -2.79 8.08 -2.39 -0.02 -2.81 16 36 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -65.42 293.80 2.89 -62.52 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.27 Total: 15.10 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 3.39 Total: -33.00 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -2.80 Total: -91.89 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.42 2.89 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235299764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.350 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds