Wall clock time and date at job start Sun Mar 29 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.02147 * 2 1 4 4 C 1.53873 * 110.03536 * 121.44120 * 2 1 3 5 5 C 1.54265 * 106.59997 * 119.28129 * 4 2 1 6 6 C 1.53002 * 110.48621 * 142.29270 * 5 4 2 7 7 C 1.52997 * 110.48914 * 264.80408 * 5 4 2 8 8 C 1.54888 * 104.19721 * 23.61451 * 5 4 2 9 9 C 1.54268 * 110.03371 * 238.60863 * 2 1 3 10 10 H 1.09002 * 110.48435 * 335.78433 * 9 2 1 11 11 N 1.46897 * 110.48570 * 98.29399 * 9 2 1 12 12 C 1.46901 * 111.00150 * 203.16049 * 11 9 2 13 13 C 1.50700 * 109.47452 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99465 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00451 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99799 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 59.99809 * 17 15 13 19 19 H 1.48501 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46969 * 300.00216 * 17 15 13 21 21 H 1.08997 * 109.47185 * 181.39124 * 1 2 3 22 22 H 1.08997 * 109.47310 * 301.39449 * 1 2 3 23 23 H 1.09001 * 109.47128 * 61.39332 * 1 2 3 24 24 H 1.08993 * 110.03875 * 238.57445 * 4 2 1 25 25 H 1.09006 * 110.02999 * 359.94984 * 4 2 1 26 26 H 1.08997 * 109.47197 * 61.45174 * 6 5 4 27 27 H 1.09003 * 109.47238 * 181.45587 * 6 5 4 28 28 H 1.08999 * 109.46942 * 301.45553 * 6 5 4 29 29 H 1.08997 * 109.47540 * 58.54511 * 7 5 4 30 30 H 1.09003 * 109.47325 * 178.54541 * 7 5 4 31 31 H 1.09000 * 109.47142 * 298.54550 * 7 5 4 32 32 H 1.08992 * 110.76047 * 203.74196 * 8 5 4 33 33 H 1.09000 * 110.75534 * 80.36765 * 8 5 4 34 34 H 1.00906 * 111.00204 * 79.20654 * 11 9 2 35 35 H 1.09001 * 109.47159 * 300.00331 * 12 11 9 36 36 H 1.09000 * 109.46935 * 60.00111 * 12 11 9 37 37 H 0.96990 * 119.99899 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0571 -0.7541 1.2334 5 6 2.8874 -1.9410 0.7026 6 6 4.1174 -2.1703 1.5833 7 6 2.0316 -3.2077 0.6400 8 6 3.3137 -1.5005 -0.7198 9 6 2.0584 -0.7549 -1.2372 10 1 1.3142 -1.4653 -1.5973 11 7 2.4210 0.1913 -2.3007 12 6 2.3944 -0.4605 -3.6169 13 6 2.7714 0.5387 -4.6801 14 1 3.0077 1.5562 -4.4054 15 6 2.8158 0.1538 -6.0033 16 7 2.5286 -1.0854 -6.3377 17 14 3.2839 1.3922 -7.3212 18 1 4.6497 1.9091 -7.0519 19 1 3.2568 0.7333 -8.6517 20 1 2.3166 2.5189 -7.3075 21 1 -0.3633 -1.0273 0.0250 22 1 -0.3634 0.5353 0.8772 23 1 -0.3633 0.4920 -0.9022 24 1 2.6866 -0.0962 1.8324 25 1 1.2229 -1.1193 1.8324 26 1 3.7984 -2.4139 2.5967 27 1 4.7050 -2.9947 1.1792 28 1 4.7251 -1.2656 1.6013 29 1 1.1711 -3.0333 -0.0058 30 1 2.6263 -4.0285 0.2392 31 1 1.6878 -3.4637 1.6422 32 1 3.5325 -2.3673 -1.3433 33 1 4.1710 -0.8288 -0.6755 34 1 3.3223 0.6083 -2.1219 35 1 3.1047 -1.2872 -3.6274 36 1 1.3919 -0.8404 -3.8140 37 1 2.5594 -1.3560 -7.2686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235588213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:17 Heat of formation + Delta-G solvation = -34.778614 kcal Electronic energy + Delta-G solvation = -14551.953055 eV Core-core repulsion = 12327.557927 eV Total energy + Delta-G solvation = -2224.395129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22757 -34.70222 -32.85575 -31.82202 -28.38297 -27.23306 -26.45131 -25.60244 -22.83892 -21.20845 -19.49582 -18.50753 -16.34140 -15.18851 -14.86201 -14.48123 -14.09040 -13.48429 -13.18540 -13.00456 -12.75382 -12.44608 -12.18265 -12.13047 -11.67254 -11.37489 -11.27931 -11.07436 -10.85295 -10.60330 -10.41704 -10.33912 -10.28483 -10.14043 -9.91538 -9.72524 -9.10840 -8.44364 -7.15185 -5.99873 -4.01679 3.35386 3.39022 3.42345 4.45565 4.75638 4.86355 4.93390 5.31703 5.35761 5.46076 5.53521 5.66167 5.69346 5.77800 5.82012 5.85383 5.93898 5.94740 6.05366 6.11254 6.18639 6.31209 6.36254 6.40058 6.44042 6.57968 6.64256 6.70211 6.84714 7.33958 7.50135 7.83502 8.18797 8.47805 8.69476 9.08017 9.63090 11.11155 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044548 B = 0.006783 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.385261 B = 4127.047034 C = 4330.924801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.069 4.069 6 C -0.136 4.136 7 C -0.135 4.135 8 C -0.142 4.142 9 C 0.091 3.909 10 H 0.074 0.926 11 N -0.683 5.683 12 C 0.196 3.804 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.328 0.672 35 H -0.014 1.014 36 H 0.025 0.975 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -1.909 14.565 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.070 4.070 6 C -0.194 4.194 7 C -0.193 4.193 8 C -0.182 4.182 9 C -0.021 4.021 10 H 0.092 0.908 11 N -0.312 5.312 12 C 0.069 3.931 13 C -0.553 4.553 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.003 0.997 36 H 0.043 0.957 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.784 -1.766 14.313 14.443 hybrid contribution 1.070 -0.030 -0.802 1.337 sum 0.286 -1.796 13.512 13.633 Atomic orbital electron populations 1.21796 0.95453 1.00923 1.01306 1.21726 0.95424 0.99711 0.93790 0.90795 1.22343 0.98758 0.96263 0.97427 1.21303 0.95023 0.95085 0.95594 1.21828 0.97282 1.01373 0.98899 1.21805 0.99792 0.96568 1.01088 1.23312 0.99220 1.00616 0.95007 1.22435 0.95311 0.92793 0.91514 0.90783 1.60686 1.34935 1.32704 1.02851 1.19536 0.96276 0.93342 0.83942 1.21184 1.45899 0.96952 0.91254 0.92102 1.24988 0.95542 0.95339 0.98707 1.69957 1.49357 1.16660 1.17853 0.86556 0.79001 0.81253 0.80553 1.20303 1.21363 1.20178 0.93390 0.93700 0.92093 0.92329 0.92141 0.93162 0.92965 0.92801 0.92338 0.92971 0.93154 0.91923 0.91690 0.85505 0.99653 0.95652 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.84 37.15 0.33 -1.63 16 2 C -0.09 -1.32 3.24 -89.50 -0.29 -1.61 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 4 C -0.11 -1.40 5.59 -25.61 -0.14 -1.55 16 5 C -0.07 -0.91 0.90 -152.85 -0.14 -1.04 16 6 C -0.14 -1.55 8.45 37.16 0.31 -1.24 16 7 C -0.14 -1.67 8.39 37.16 0.31 -1.36 16 8 C -0.14 -2.28 5.36 -24.74 -0.13 -2.41 16 9 C 0.09 1.63 2.35 -66.05 -0.15 1.48 16 10 H 0.07 1.44 7.09 -51.93 -0.37 1.07 16 11 N -0.68 -14.87 6.27 -106.24 -0.67 -15.54 16 12 C 0.20 5.21 5.30 -4.98 -0.03 5.19 16 13 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 14 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.70 7.84 -51.93 -0.41 0.30 16 25 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.06 1.04 7.73 -51.93 -0.40 0.64 16 34 H 0.33 6.89 8.26 -39.29 -0.32 6.57 16 35 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 36 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -29.46 292.84 -7.76 -37.22 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.87 Total: 1.24 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.35 Total: -17.80 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.07 Total: -42.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.46 -7.76 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235588213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.443 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds