Wall clock time and date at job start Sun Mar 29 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.02147 * 2 1 4 4 C 1.53873 * 110.03536 * 121.44120 * 2 1 3 5 5 C 1.54265 * 106.59997 * 119.28129 * 4 2 1 6 6 C 1.53002 * 110.48621 * 142.29270 * 5 4 2 7 7 C 1.52997 * 110.48914 * 264.80408 * 5 4 2 8 8 C 1.54888 * 104.19721 * 23.61451 * 5 4 2 9 9 C 1.54268 * 110.03371 * 238.60863 * 2 1 3 10 10 H 1.09002 * 110.48435 * 335.78433 * 9 2 1 11 11 N 1.46897 * 110.48570 * 98.29399 * 9 2 1 12 12 C 1.46901 * 111.00150 * 203.16049 * 11 9 2 13 13 C 1.50700 * 109.47452 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99465 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00451 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99799 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 59.99809 * 17 15 13 19 19 H 1.48501 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46969 * 300.00216 * 17 15 13 21 21 H 1.08997 * 109.47185 * 181.39124 * 1 2 3 22 22 H 1.08997 * 109.47310 * 301.39449 * 1 2 3 23 23 H 1.09001 * 109.47128 * 61.39332 * 1 2 3 24 24 H 1.08993 * 110.03875 * 238.57445 * 4 2 1 25 25 H 1.09006 * 110.02999 * 359.94984 * 4 2 1 26 26 H 1.08997 * 109.47197 * 61.45174 * 6 5 4 27 27 H 1.09003 * 109.47238 * 181.45587 * 6 5 4 28 28 H 1.08999 * 109.46942 * 301.45553 * 6 5 4 29 29 H 1.08997 * 109.47540 * 58.54511 * 7 5 4 30 30 H 1.09003 * 109.47325 * 178.54541 * 7 5 4 31 31 H 1.09000 * 109.47142 * 298.54550 * 7 5 4 32 32 H 1.08992 * 110.76047 * 203.74196 * 8 5 4 33 33 H 1.09000 * 110.75534 * 80.36765 * 8 5 4 34 34 H 1.00906 * 111.00204 * 79.20654 * 11 9 2 35 35 H 1.09001 * 109.47159 * 300.00331 * 12 11 9 36 36 H 1.09000 * 109.46935 * 60.00111 * 12 11 9 37 37 H 0.96990 * 119.99899 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0571 -0.7541 1.2334 5 6 2.8874 -1.9410 0.7026 6 6 4.1174 -2.1703 1.5833 7 6 2.0316 -3.2077 0.6400 8 6 3.3137 -1.5005 -0.7198 9 6 2.0584 -0.7549 -1.2372 10 1 1.3142 -1.4653 -1.5973 11 7 2.4210 0.1913 -2.3007 12 6 2.3944 -0.4605 -3.6169 13 6 2.7714 0.5387 -4.6801 14 1 3.0077 1.5562 -4.4054 15 6 2.8158 0.1538 -6.0033 16 7 2.5286 -1.0854 -6.3377 17 14 3.2839 1.3922 -7.3212 18 1 4.6497 1.9091 -7.0519 19 1 3.2568 0.7333 -8.6517 20 1 2.3166 2.5189 -7.3075 21 1 -0.3633 -1.0273 0.0250 22 1 -0.3634 0.5353 0.8772 23 1 -0.3633 0.4920 -0.9022 24 1 2.6866 -0.0962 1.8324 25 1 1.2229 -1.1193 1.8324 26 1 3.7984 -2.4139 2.5967 27 1 4.7050 -2.9947 1.1792 28 1 4.7251 -1.2656 1.6013 29 1 1.1711 -3.0333 -0.0058 30 1 2.6263 -4.0285 0.2392 31 1 1.6878 -3.4637 1.6422 32 1 3.5325 -2.3673 -1.3433 33 1 4.1710 -0.8288 -0.6755 34 1 3.3223 0.6083 -2.1219 35 1 3.1047 -1.2872 -3.6274 36 1 1.3919 -0.8404 -3.8140 37 1 2.5594 -1.3560 -7.2686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235588213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:17 Heat of formation + Delta-G solvation = -52.829200 kcal Electronic energy + Delta-G solvation = -14552.735787 eV Core-core repulsion = 12327.557927 eV Total energy + Delta-G solvation = -2225.177861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48566 -36.45249 -34.59376 -33.42825 -30.01901 -28.20035 -27.86220 -27.15174 -24.49747 -23.04297 -20.86957 -19.62113 -18.48049 -16.84231 -16.44802 -16.06618 -15.42661 -14.72218 -14.53280 -14.45030 -14.21854 -14.02493 -13.70809 -13.30470 -13.11836 -12.81790 -12.72197 -12.69486 -12.42929 -12.22947 -11.92914 -11.77372 -11.57159 -11.41954 -11.30077 -11.13826 -11.02597 -10.65803 -8.98395 -8.23170 -6.35051 1.39705 1.43793 1.51813 2.39251 3.09514 3.51419 3.60509 3.77850 4.03213 4.32386 4.37804 4.46198 4.51415 4.57203 4.61147 4.77270 4.84897 4.92212 4.95230 5.02259 5.07325 5.13432 5.15147 5.16505 5.23446 5.29839 5.35702 5.40537 5.51889 5.54410 5.61054 5.66034 6.03480 6.49861 6.75541 6.91176 7.36230 8.88215 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044548 B = 0.006783 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.385261 B = 4127.047034 C = 4330.924801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.101 4.101 5 C -0.064 4.064 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.140 4.140 9 C 0.084 3.916 10 H 0.051 0.949 11 N -0.682 5.682 12 C 0.214 3.786 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.268 1.268 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.333 0.667 35 H -0.042 1.042 36 H -0.007 1.007 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -1.028 16.100 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.139 4.139 5 C -0.065 4.065 6 C -0.190 4.190 7 C -0.193 4.193 8 C -0.179 4.179 9 C -0.026 4.026 10 H 0.070 0.930 11 N -0.311 5.311 12 C 0.087 3.913 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.151 0.849 35 H -0.024 1.024 36 H 0.011 0.989 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.393 -0.883 15.880 15.910 hybrid contribution 0.923 -0.348 -1.263 1.603 sum 0.529 -1.231 14.617 14.678 Atomic orbital electron populations 1.21777 0.94766 1.01378 1.01302 1.21676 0.96011 0.99253 0.93201 0.91298 1.22304 0.99468 0.95861 0.96272 1.21295 0.96099 0.95554 0.93552 1.21797 0.96237 1.01537 0.99468 1.21817 0.99087 0.96195 1.02180 1.23233 0.98117 0.99510 0.97052 1.22549 0.95928 0.92542 0.91600 0.93027 1.60600 1.35184 1.33444 1.01900 1.19128 0.93361 0.92417 0.86443 1.21555 1.46404 0.97382 0.92308 0.91786 1.25987 0.95063 0.97449 1.01280 1.70096 1.50006 1.18794 1.18621 0.85364 0.79166 0.78487 0.77145 1.19014 1.20689 1.19303 0.92890 0.91043 0.94577 0.90718 0.90264 0.91038 0.93112 0.92548 0.93852 0.93243 0.90701 0.94118 0.91676 0.84949 1.02424 0.98920 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.84 71.98 0.64 -3.05 16 2 C -0.08 -2.39 3.24 -10.07 -0.03 -2.43 16 3 H 0.07 2.09 8.04 -2.38 -0.02 2.07 16 4 C -0.10 -2.29 5.59 31.32 0.18 -2.12 16 5 C -0.06 -1.56 0.90 -51.11 -0.05 -1.61 16 6 C -0.13 -2.66 8.45 71.98 0.61 -2.05 16 7 C -0.14 -3.15 8.39 71.98 0.60 -2.55 16 8 C -0.14 -4.53 5.36 31.89 0.17 -4.36 16 9 C 0.08 3.11 2.35 45.99 0.11 3.22 16 10 H 0.05 2.12 7.09 -2.39 -0.02 2.10 16 11 N -0.68 -30.71 6.27 -490.02 -3.07 -33.79 16 12 C 0.21 11.99 5.30 85.56 0.45 12.45 16 13 C -0.54 -31.72 9.32 25.60 0.24 -31.49 16 14 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 17 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.50 7.84 -2.39 -0.02 1.48 16 25 H 0.08 1.55 7.38 -2.38 -0.02 1.53 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.12 7.38 -2.39 -0.02 1.11 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.47 8.05 -2.39 -0.02 1.45 16 33 H 0.06 2.09 7.73 -2.39 -0.02 2.07 16 34 H 0.33 14.31 8.26 -89.69 -0.74 13.57 16 35 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 36 H -0.01 -0.45 8.08 -2.39 -0.02 -0.47 16 37 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 Total: -1.00 -64.56 292.84 2.88 -61.68 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.26 Total: 16.08 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.38 Total: -33.51 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -2.79 Total: -91.45 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.56 2.88 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235588213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds