Wall clock time and date at job start Sun Mar 29 2020 21:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47297 * 240.00331 * 3 2 1 5 5 H 1.48503 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47054 * 120.00378 * 3 2 1 7 7 C 1.37879 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47448 * 179.97438 * 9 7 2 11 11 C 1.37417 * 123.36029 * 265.17023 * 10 9 7 12 12 C 1.33858 * 115.11145 * 180.27134 * 11 10 9 13 13 S 1.70615 * 110.96546 * 359.76027 * 12 11 10 14 14 C 1.36756 * 123.35554 * 84.99813 * 10 9 7 15 15 C 1.46390 * 125.45980 * 0.02562 * 14 10 9 16 16 O 1.21624 * 120.00124 * 359.44617 * 15 14 10 17 17 O 1.34904 * 119.99807 * 179.71616 * 15 14 10 18 18 H 0.97002 * 120.00263 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.46954 * 60.00000 * 9 7 2 20 20 H 1.08999 * 109.46880 * 300.00477 * 9 7 2 21 21 H 1.07998 * 122.44063 * 0.03916 * 11 10 9 22 22 H 1.08001 * 124.51504 * 179.80232 * 12 11 10 23 23 H 0.96695 * 116.99947 * 179.72569 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.6470 -4.2813 -1.1461 12 6 3.5159 -5.2815 -0.9554 13 16 3.8684 -5.4761 0.7026 14 6 2.7955 -4.1519 1.1355 15 6 2.5428 -3.6734 2.4957 16 8 1.7817 -2.7432 2.6816 17 8 3.1584 -4.2608 3.5426 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.2960 -3.9978 -2.1273 22 1 3.9380 -5.8844 -1.7457 23 1 2.9632 -3.9076 4.4213 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238713865.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:19 Heat of formation + Delta-G solvation = -87.860723 kcal Electronic energy + Delta-G solvation = -11722.579295 eV Core-core repulsion = 9433.417279 eV Total energy + Delta-G solvation = -2289.162016 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.03935 -38.98488 -36.84146 -35.03705 -31.82199 -29.92392 -26.46043 -24.05698 -23.27994 -19.71222 -19.40715 -18.55013 -17.97314 -16.72884 -16.54886 -16.22929 -15.60548 -14.56875 -14.14021 -14.09891 -13.88328 -13.41195 -12.95747 -12.61458 -12.54023 -12.44701 -12.05675 -11.65687 -11.55297 -11.24907 -10.53241 -9.76209 -9.19469 -8.16383 -6.26618 -0.45998 0.64067 1.03497 1.35345 1.40796 1.41546 1.48338 2.08258 2.21198 2.43616 3.15956 4.14780 4.35915 4.50283 4.69340 5.05206 5.15459 5.30003 5.45069 5.64688 5.77243 5.86916 6.18422 6.81436 7.10703 7.38379 8.94208 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.010951 C = 0.009481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.677707 B = 2556.169408 C = 2952.595913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.047 0.953 9 C 0.065 3.935 10 C 0.008 3.992 11 C -0.174 4.174 12 C -0.201 4.201 13 S 0.267 5.733 14 C -0.316 4.316 15 C 0.546 3.454 16 O -0.523 6.523 17 O -0.509 6.509 18 H 0.263 0.737 19 H 0.008 0.992 20 H 0.018 0.982 21 H 0.149 0.851 22 H 0.212 0.788 23 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -11.861 1.184 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.007 4.007 11 C -0.205 4.205 12 C -0.339 4.339 13 S 0.536 5.464 14 C -0.433 4.433 15 C 0.390 3.610 16 O -0.414 6.414 17 O -0.323 6.323 18 H 0.072 0.928 19 H 0.026 0.974 20 H 0.036 0.964 21 H 0.166 0.834 22 H 0.229 0.771 23 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 9.931 -12.687 1.674 16.198 hybrid contribution -1.201 2.378 -0.196 2.671 sum 8.730 -10.308 1.478 13.589 Atomic orbital electron populations 1.70076 1.07614 1.27685 1.51675 1.25852 0.95770 1.02888 0.94813 0.85544 0.78365 0.78403 0.78971 1.18556 1.20412 1.20178 1.21053 0.92417 0.90932 1.50377 0.93426 1.17983 0.92733 0.90167 0.96443 1.20188 0.94640 0.94207 0.91696 1.19985 1.02408 0.98811 0.99346 1.25846 1.02188 1.02438 1.03413 1.82356 1.39942 1.27078 0.97058 1.23332 1.15157 1.11075 0.93726 1.19611 0.77035 0.79332 0.85012 1.91047 1.36036 1.28454 1.85857 1.84508 1.67120 1.61231 1.19453 0.92798 0.97410 0.96415 0.83378 0.77133 0.70949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.01 13.29 21.45 0.28 -58.72 14 2 C 0.00 0.27 5.46 84.66 0.46 0.73 14 3 Si 0.96 46.64 29.54 68.60 2.03 48.66 14 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 14 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 14 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 14 7 C -0.51 -30.66 8.84 25.60 0.23 -30.43 14 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 14 9 C 0.07 3.71 4.55 29.10 0.13 3.84 14 10 C 0.01 0.35 5.10 -20.41 -0.10 0.24 14 11 C -0.17 -6.16 9.96 21.08 0.21 -5.95 14 12 C -0.20 -5.19 10.92 66.82 0.73 -4.46 14 13 S 0.27 7.18 22.92 -56.49 -1.29 5.88 14 14 C -0.32 -12.70 6.45 24.05 0.16 -12.54 14 15 C 0.55 22.73 8.29 69.94 0.58 23.31 14 16 O -0.52 -27.17 14.93 19.43 0.29 -26.88 14 17 O -0.51 -15.10 13.29 -58.19 -0.77 -15.87 14 18 H 0.26 15.68 8.31 -92.71 -0.77 14.91 14 19 H 0.01 0.45 8.12 -2.39 -0.02 0.43 14 20 H 0.02 1.12 6.34 -2.39 -0.02 1.11 14 21 H 0.15 4.95 8.06 -2.91 -0.02 4.92 14 22 H 0.21 3.36 8.06 -2.91 -0.02 3.34 14 23 H 0.43 8.57 9.11 -74.06 -0.67 7.89 14 Total: -1.00 -76.30 230.60 3.50 -72.81 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 0.57 Total: -0.62 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 2.39 Total: -25.26 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.28 Total: -58.72 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.48 Total: -42.76 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -1.29 Total: 5.88 kcal Total: -76.30 3.50 -72.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238713865.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds