Wall clock time and date at job start Sun Mar 29 2020 21:47:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00041 * 2 1
4 4 H 1.48502 * 109.47297 * 240.00331 * 3 2 1
5 5 H 1.48503 * 109.46946 * 0.02562 * 3 2 1
6 6 H 1.48493 * 109.47054 * 120.00378 * 3 2 1
7 7 C 1.37879 * 120.00198 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00683 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99898 * 359.97438 * 7 2 1
10 10 C 1.50692 * 109.47448 * 179.97438 * 9 7 2
11 11 C 1.37417 * 123.36029 * 265.17023 * 10 9 7
12 12 C 1.33858 * 115.11145 * 180.27134 * 11 10 9
13 13 S 1.70615 * 110.96546 * 359.76027 * 12 11 10
14 14 C 1.36756 * 123.35554 * 84.99813 * 10 9 7
15 15 C 1.46390 * 125.45980 * 0.02562 * 14 10 9
16 16 O 1.21624 * 120.00124 * 359.44617 * 15 14 10
17 17 O 1.34904 * 119.99807 * 179.71616 * 15 14 10
18 18 H 0.97002 * 120.00263 * 359.97438 * 1 2 3
19 19 H 1.08999 * 109.46954 * 60.00000 * 9 7 2
20 20 H 1.08999 * 109.46880 * 300.00477 * 9 7 2
21 21 H 1.07998 * 122.44063 * 0.03916 * 11 10 9
22 22 H 1.08001 * 124.51504 * 179.80232 * 12 11 10
23 23 H 0.96695 * 116.99947 * 179.72569 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6965 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2303 -3.6446 -0.0018
11 6 2.6470 -4.2813 -1.1461
12 6 3.5159 -5.2815 -0.9554
13 16 3.8684 -5.4761 0.7026
14 6 2.7955 -4.1519 1.1355
15 6 2.5428 -3.6734 2.4957
16 8 1.7817 -2.7432 2.6816
17 8 3.1584 -4.2608 3.5426
18 1 -0.4850 0.8400 0.0004
19 1 0.6241 -2.5567 -0.8903
20 1 0.6247 -2.5571 0.8896
21 1 2.2960 -3.9978 -2.1273
22 1 3.9380 -5.8844 -1.7457
23 1 2.9632 -3.9076 4.4213
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238713865.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:47:19
Heat of formation + Delta-G solvation = -87.860723 kcal
Electronic energy + Delta-G solvation = -11722.579295 eV
Core-core repulsion = 9433.417279 eV
Total energy + Delta-G solvation = -2289.162016 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 212.029 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-41.03935 -38.98488 -36.84146 -35.03705 -31.82199 -29.92392 -26.46043 -24.05698
-23.27994 -19.71222 -19.40715 -18.55013 -17.97314 -16.72884 -16.54886 -16.22929
-15.60548 -14.56875 -14.14021 -14.09891 -13.88328 -13.41195 -12.95747 -12.61458
-12.54023 -12.44701 -12.05675 -11.65687 -11.55297 -11.24907 -10.53241 -9.76209
-9.19469 -8.16383 -6.26618 -0.45998 0.64067 1.03497 1.35345 1.40796
1.41546 1.48338 2.08258 2.21198 2.43616 3.15956 4.14780 4.35915
4.50283 4.69340 5.05206 5.15459 5.30003 5.45069 5.64688 5.77243
5.86916 6.18422 6.81436 7.10703 7.38379 8.94208
Molecular weight = 212.03amu
Principal moments of inertia in cm(-1)
A = 0.035050 B = 0.010951 C = 0.009481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.677707 B = 2556.169408 C = 2952.595913
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.004 3.996
3 Si 0.963 3.037
4 H -0.261 1.261
5 H -0.279 1.279
6 H -0.276 1.276
7 C -0.509 4.509
8 H 0.047 0.953
9 C 0.065 3.935
10 C 0.008 3.992
11 C -0.174 4.174
12 C -0.201 4.201
13 S 0.267 5.733
14 C -0.316 4.316
15 C 0.546 3.454
16 O -0.523 6.523
17 O -0.509 6.509
18 H 0.263 0.737
19 H 0.008 0.992
20 H 0.018 0.982
21 H 0.149 0.851
22 H 0.212 0.788
23 H 0.429 0.571
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.238 -11.861 1.184 15.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.193 4.193
3 Si 0.787 3.213
4 H -0.186 1.186
5 H -0.204 1.204
6 H -0.202 1.202
7 C -0.548 4.548
8 H 0.066 0.934
9 C 0.027 3.973
10 C -0.007 4.007
11 C -0.205 4.205
12 C -0.339 4.339
13 S 0.536 5.464
14 C -0.433 4.433
15 C 0.390 3.610
16 O -0.414 6.414
17 O -0.323 6.323
18 H 0.072 0.928
19 H 0.026 0.974
20 H 0.036 0.964
21 H 0.166 0.834
22 H 0.229 0.771
23 H 0.291 0.709
Dipole moment (debyes) X Y Z Total
from point charges 9.931 -12.687 1.674 16.198
hybrid contribution -1.201 2.378 -0.196 2.671
sum 8.730 -10.308 1.478 13.589
Atomic orbital electron populations
1.70076 1.07614 1.27685 1.51675 1.25852 0.95770 1.02888 0.94813
0.85544 0.78365 0.78403 0.78971 1.18556 1.20412 1.20178 1.21053
0.92417 0.90932 1.50377 0.93426 1.17983 0.92733 0.90167 0.96443
1.20188 0.94640 0.94207 0.91696 1.19985 1.02408 0.98811 0.99346
1.25846 1.02188 1.02438 1.03413 1.82356 1.39942 1.27078 0.97058
1.23332 1.15157 1.11075 0.93726 1.19611 0.77035 0.79332 0.85012
1.91047 1.36036 1.28454 1.85857 1.84508 1.67120 1.61231 1.19453
0.92798 0.97410 0.96415 0.83378 0.77133 0.70949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -59.01 13.29 21.45 0.28 -58.72 14
2 C 0.00 0.27 5.46 84.66 0.46 0.73 14
3 Si 0.96 46.64 29.54 68.60 2.03 48.66 14
4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 14
5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 14
6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 14
7 C -0.51 -30.66 8.84 25.60 0.23 -30.43 14
8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 14
9 C 0.07 3.71 4.55 29.10 0.13 3.84 14
10 C 0.01 0.35 5.10 -20.41 -0.10 0.24 14
11 C -0.17 -6.16 9.96 21.08 0.21 -5.95 14
12 C -0.20 -5.19 10.92 66.82 0.73 -4.46 14
13 S 0.27 7.18 22.92 -56.49 -1.29 5.88 14
14 C -0.32 -12.70 6.45 24.05 0.16 -12.54 14
15 C 0.55 22.73 8.29 69.94 0.58 23.31 14
16 O -0.52 -27.17 14.93 19.43 0.29 -26.88 14
17 O -0.51 -15.10 13.29 -58.19 -0.77 -15.87 14
18 H 0.26 15.68 8.31 -92.71 -0.77 14.91 14
19 H 0.01 0.45 8.12 -2.39 -0.02 0.43 14
20 H 0.02 1.12 6.34 -2.39 -0.02 1.11 14
21 H 0.15 4.95 8.06 -2.91 -0.02 4.92 14
22 H 0.21 3.36 8.06 -2.91 -0.02 3.34 14
23 H 0.43 8.57 9.11 -74.06 -0.67 7.89 14
Total: -1.00 -76.30 230.60 3.50 -72.81
By element:
Atomic # 1 Polarization: -1.19 SS G_CDS: 0.57 Total: -0.62 kcal
Atomic # 6 Polarization: -27.65 SS G_CDS: 2.39 Total: -25.26 kcal
Atomic # 7 Polarization: -59.01 SS G_CDS: 0.28 Total: -58.72 kcal
Atomic # 8 Polarization: -42.28 SS G_CDS: -0.48 Total: -42.76 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal
Atomic # 16 Polarization: 7.18 SS G_CDS: -1.29 Total: 5.88 kcal
Total: -76.30 3.50 -72.81 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238713865.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal
(2) G-P(sol) polarization free energy of solvation -76.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds