Wall clock time and date at job start Sun Mar 29 2020 21:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 H 1.09001 * 109.47149 * 304.36634 * 3 2 1 5 5 C 1.50699 * 109.47311 * 184.36562 * 3 2 1 6 6 H 1.07998 * 119.99858 * 239.99986 * 5 3 2 7 7 C 1.37872 * 119.99841 * 59.99972 * 5 3 2 8 8 N 1.31517 * 120.00212 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47292 * 89.99943 * 9 7 5 11 11 H 1.48494 * 109.47151 * 209.99777 * 9 7 5 12 12 H 1.48497 * 109.47055 * 329.99596 * 9 7 5 13 13 N 1.46902 * 109.47288 * 64.36450 * 3 2 1 14 14 C 1.46903 * 111.00126 * 207.58751 * 13 3 2 15 15 H 1.08997 * 110.01540 * 32.24847 * 14 13 3 16 16 C 1.53871 * 110.03223 * 270.85108 * 14 13 3 17 17 C 1.54262 * 106.59894 * 240.66624 * 16 14 13 18 18 C 1.54888 * 104.19752 * 336.38980 * 17 16 14 19 19 C 1.54266 * 110.07167 * 153.65842 * 14 13 3 20 20 H 1.09005 * 110.48836 * 24.24209 * 19 14 13 21 21 C 1.52995 * 110.49030 * 261.72871 * 19 14 13 22 22 H 1.09004 * 109.47172 * 174.93727 * 1 2 3 23 23 H 1.09000 * 109.47441 * 294.93781 * 1 2 3 24 24 H 1.08997 * 109.47167 * 54.93658 * 1 2 3 25 25 H 1.08993 * 109.47420 * 239.99713 * 2 1 3 26 26 H 1.08998 * 109.46980 * 119.99832 * 2 1 3 27 27 H 0.96998 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00156 * 83.63331 * 13 3 2 29 29 H 1.09005 * 110.03198 * 121.38540 * 16 14 13 30 30 H 1.08994 * 110.07580 * 359.97372 * 16 14 13 31 31 H 1.09000 * 110.48582 * 95.06714 * 17 16 14 32 32 H 1.09002 * 110.48589 * 217.71387 * 17 16 14 33 33 H 1.09001 * 110.75894 * 156.25517 * 18 17 16 34 34 H 1.08996 * 110.75972 * 279.63062 * 18 17 16 35 35 H 1.09002 * 109.46861 * 60.00065 * 21 19 14 36 36 H 1.09000 * 109.47429 * 179.97438 * 21 19 14 37 37 H 1.08999 * 109.47315 * 299.99980 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6141 1.9784 -0.8483 5 6 3.5431 1.4439 -0.1082 6 1 4.1402 1.8914 0.6726 7 6 4.1559 0.8740 -1.2038 8 7 3.4287 0.3295 -2.1548 9 14 6.0191 0.8752 -1.3376 10 1 6.5615 -0.3545 -0.7060 11 1 6.4126 0.9112 -2.7690 12 1 6.5644 2.0697 -0.6441 13 7 1.6382 2.1039 1.2487 14 6 1.5017 3.5538 1.0561 15 1 1.1641 3.7653 0.0415 16 6 2.8485 4.2497 1.3194 17 6 2.6184 5.2260 2.4914 18 6 1.0962 5.5101 2.4559 19 6 0.5000 4.1315 2.0772 20 1 0.4371 3.4889 2.9554 21 6 -0.8799 4.2991 1.4380 22 1 -0.3634 -1.0237 -0.0907 23 1 -0.3634 0.4333 0.9318 24 1 -0.3633 0.5904 -0.8411 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8599 -0.0717 -2.9255 28 1 2.2880 1.8976 1.9924 29 1 3.1647 4.7990 0.4325 30 1 3.6039 3.5123 1.5906 31 1 2.8976 4.7601 3.4364 32 1 3.1819 6.1463 2.3375 33 1 0.7398 5.8292 3.4353 34 1 0.8598 6.2550 1.6961 35 1 -1.2421 3.3295 1.0962 36 1 -1.5737 4.7072 2.1729 37 1 -0.8071 4.9795 0.5895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251370249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:24 Heat of formation + Delta-G solvation = -30.491632 kcal Electronic energy + Delta-G solvation = -14903.031574 eV Core-core repulsion = 12678.822343 eV Total energy + Delta-G solvation = -2224.209231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.38008 -35.20230 -31.96738 -30.87935 -30.60965 -26.97248 -25.65696 -23.92917 -22.44623 -20.16781 -19.55589 -18.95302 -16.44768 -15.30000 -14.80194 -14.50737 -13.58876 -13.34606 -13.01758 -12.90562 -12.53161 -12.22512 -11.81162 -11.46163 -11.20776 -11.17687 -10.81234 -10.66507 -10.54736 -10.47705 -10.32033 -10.17358 -10.02592 -9.89902 -9.52465 -9.27787 -8.92206 -8.34233 -7.14301 -5.95929 -4.08225 3.27784 3.35147 3.37394 4.41544 5.05051 5.08715 5.19488 5.30014 5.61076 5.76255 5.89583 5.98550 6.02724 6.05953 6.10448 6.28129 6.35019 6.43442 6.44792 6.52200 6.54597 6.64040 6.75454 6.78672 6.87685 6.99149 7.20480 7.21925 7.51221 7.66759 7.82370 8.15160 8.22246 8.41849 8.75179 9.05936 9.59029 11.04037 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.010683 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.751575 B = 2620.436333 C = 3387.695856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.100 3.900 15 H 0.068 0.932 16 C -0.146 4.146 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.087 4.087 20 H 0.075 0.925 21 C -0.137 4.137 22 H 0.023 0.977 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 6.648 6.513 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.011 4.011 15 H 0.086 0.914 16 C -0.185 4.185 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.106 4.106 20 H 0.093 0.907 21 C -0.194 4.194 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.896 6.406 6.215 10.180 hybrid contribution 2.143 0.233 -0.309 2.178 sum -2.752 6.638 5.906 9.302 Atomic orbital electron populations 1.21681 0.99094 0.98139 1.00323 1.21504 0.92018 0.99470 1.01532 1.19191 0.92688 0.91059 0.86286 0.95254 1.21919 0.92736 1.37553 1.05638 0.92653 1.24937 0.97721 0.95167 0.95794 1.69882 1.34726 1.38287 1.09562 0.86702 0.86426 0.78334 0.77157 1.20735 1.21301 1.20107 1.60898 1.53819 1.06516 1.09926 1.22089 0.92311 0.89012 0.97714 0.91366 1.22919 0.99514 0.98758 0.97345 1.22340 0.95935 0.98884 0.99021 1.22563 0.95581 0.97487 1.00285 1.22003 0.94592 0.95120 0.98917 0.90704 1.21713 0.96388 1.01623 0.99666 0.95814 0.93472 0.94559 0.89319 0.95200 0.92994 0.85550 0.92558 0.90927 0.92285 0.92764 0.92496 0.92030 0.92223 0.93798 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.28 1.99 -68.87 -0.14 5.14 16 4 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 5 C -0.54 -14.28 7.92 -34.44 -0.27 -14.55 16 6 H 0.06 1.45 6.12 -52.49 -0.32 1.13 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -25.06 11.30 55.43 0.63 -24.44 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.14 5.53 -99.78 -0.55 -14.69 16 14 C 0.10 1.85 2.81 -66.59 -0.19 1.67 16 15 H 0.07 1.40 7.08 -51.93 -0.37 1.03 16 16 C -0.15 -2.61 5.97 -25.62 -0.15 -2.76 16 17 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 18 C -0.12 -1.64 6.33 -24.74 -0.16 -1.80 16 19 C -0.09 -1.34 3.16 -88.96 -0.28 -1.62 16 20 H 0.07 1.18 8.05 -51.93 -0.42 0.77 16 21 C -0.14 -1.95 9.12 37.15 0.34 -1.61 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.33 6.79 7.74 -39.29 -0.30 6.49 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.43 5.78 -51.93 -0.30 1.13 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -26.67 286.04 -8.13 -34.79 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.59 Total: 4.84 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.90 Total: -20.96 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.07 Total: -39.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.67 -8.13 -34.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251370249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.303 kcal (2) G-P(sol) polarization free energy of solvation -26.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds