Wall clock time and date at job start Sun Mar 29 2020 21:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 H 1.09001 * 109.47149 * 304.36634 * 3 2 1 5 5 C 1.50699 * 109.47311 * 184.36562 * 3 2 1 6 6 H 1.07998 * 119.99858 * 239.99986 * 5 3 2 7 7 C 1.37872 * 119.99841 * 59.99972 * 5 3 2 8 8 N 1.31517 * 120.00212 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47292 * 89.99943 * 9 7 5 11 11 H 1.48494 * 109.47151 * 209.99777 * 9 7 5 12 12 H 1.48497 * 109.47055 * 329.99596 * 9 7 5 13 13 N 1.46902 * 109.47288 * 64.36450 * 3 2 1 14 14 C 1.46903 * 111.00126 * 207.58751 * 13 3 2 15 15 H 1.08997 * 110.01540 * 32.24847 * 14 13 3 16 16 C 1.53871 * 110.03223 * 270.85108 * 14 13 3 17 17 C 1.54262 * 106.59894 * 240.66624 * 16 14 13 18 18 C 1.54888 * 104.19752 * 336.38980 * 17 16 14 19 19 C 1.54266 * 110.07167 * 153.65842 * 14 13 3 20 20 H 1.09005 * 110.48836 * 24.24209 * 19 14 13 21 21 C 1.52995 * 110.49030 * 261.72871 * 19 14 13 22 22 H 1.09004 * 109.47172 * 174.93727 * 1 2 3 23 23 H 1.09000 * 109.47441 * 294.93781 * 1 2 3 24 24 H 1.08997 * 109.47167 * 54.93658 * 1 2 3 25 25 H 1.08993 * 109.47420 * 239.99713 * 2 1 3 26 26 H 1.08998 * 109.46980 * 119.99832 * 2 1 3 27 27 H 0.96998 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00156 * 83.63331 * 13 3 2 29 29 H 1.09005 * 110.03198 * 121.38540 * 16 14 13 30 30 H 1.08994 * 110.07580 * 359.97372 * 16 14 13 31 31 H 1.09000 * 110.48582 * 95.06714 * 17 16 14 32 32 H 1.09002 * 110.48589 * 217.71387 * 17 16 14 33 33 H 1.09001 * 110.75894 * 156.25517 * 18 17 16 34 34 H 1.08996 * 110.75972 * 279.63062 * 18 17 16 35 35 H 1.09002 * 109.46861 * 60.00065 * 21 19 14 36 36 H 1.09000 * 109.47429 * 179.97438 * 21 19 14 37 37 H 1.08999 * 109.47315 * 299.99980 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6141 1.9784 -0.8483 5 6 3.5431 1.4439 -0.1082 6 1 4.1402 1.8914 0.6726 7 6 4.1559 0.8740 -1.2038 8 7 3.4287 0.3295 -2.1548 9 14 6.0191 0.8752 -1.3376 10 1 6.5615 -0.3545 -0.7060 11 1 6.4126 0.9112 -2.7690 12 1 6.5644 2.0697 -0.6441 13 7 1.6382 2.1039 1.2487 14 6 1.5017 3.5538 1.0561 15 1 1.1641 3.7653 0.0415 16 6 2.8485 4.2497 1.3194 17 6 2.6184 5.2260 2.4914 18 6 1.0962 5.5101 2.4559 19 6 0.5000 4.1315 2.0772 20 1 0.4371 3.4889 2.9554 21 6 -0.8799 4.2991 1.4380 22 1 -0.3634 -1.0237 -0.0907 23 1 -0.3634 0.4333 0.9318 24 1 -0.3633 0.5904 -0.8411 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8599 -0.0717 -2.9255 28 1 2.2880 1.8976 1.9924 29 1 3.1647 4.7990 0.4325 30 1 3.6039 3.5123 1.5906 31 1 2.8976 4.7601 3.4364 32 1 3.1819 6.1463 2.3375 33 1 0.7398 5.8292 3.4353 34 1 0.8598 6.2550 1.6961 35 1 -1.2421 3.3295 1.0962 36 1 -1.5737 4.7072 2.1729 37 1 -0.8071 4.9795 0.5895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251370249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:24 Heat of formation + Delta-G solvation = -45.253577 kcal Electronic energy + Delta-G solvation = -14903.671700 eV Core-core repulsion = 12678.822343 eV Total energy + Delta-G solvation = -2224.849357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81627 -36.98892 -33.94712 -32.46000 -31.98068 -28.72698 -27.25408 -25.37149 -24.26945 -21.65398 -21.16853 -20.47448 -18.47152 -16.87517 -16.56914 -15.96163 -15.30505 -14.85900 -14.63732 -14.32622 -14.13219 -13.62733 -13.41743 -13.18717 -13.08267 -12.80074 -12.62189 -12.36425 -12.06144 -11.93882 -11.76656 -11.57039 -11.45967 -11.40151 -11.30328 -11.05933 -10.80013 -10.43720 -8.92652 -8.02420 -6.23890 1.36636 1.38393 1.46691 2.40190 3.16393 3.66339 3.82530 3.92979 4.22409 4.47824 4.58297 4.68375 4.69920 4.76834 4.78421 4.80056 4.90155 4.94722 5.06789 5.11683 5.16579 5.23368 5.31365 5.42230 5.42522 5.43425 5.49545 5.61203 5.64638 5.71133 5.81061 6.14589 6.24817 6.47972 6.90855 7.08433 7.47203 8.93566 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.010683 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.751575 B = 2620.436333 C = 3387.695856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.008 1.008 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.096 3.904 15 H 0.041 0.959 16 C -0.146 4.146 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.081 4.081 20 H 0.075 0.925 21 C -0.134 4.134 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 7.714 8.147 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.010 0.990 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.302 5.302 14 C -0.015 4.015 15 H 0.059 0.941 16 C -0.185 4.185 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.100 4.100 20 H 0.094 0.906 21 C -0.191 4.191 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.102 7.484 7.864 11.995 hybrid contribution 2.196 -0.089 -0.831 2.349 sum -2.907 7.396 7.032 10.611 Atomic orbital electron populations 1.21531 0.96504 0.99374 1.00529 1.21371 0.94330 0.98649 0.99870 1.18939 0.91589 0.91267 0.86642 0.98967 1.22218 0.93928 1.37020 1.05532 0.92720 1.25666 1.01813 0.95100 0.95683 1.70018 1.36252 1.39050 1.09992 0.85742 0.81549 0.78420 0.77017 1.20212 1.21199 1.19665 1.60876 1.53221 1.07955 1.08135 1.22192 0.93921 0.87837 0.97589 0.94058 1.22836 0.98276 0.98959 0.98445 1.22305 0.97107 0.98466 0.97539 1.22538 0.94347 0.96172 1.01927 1.21945 0.94244 0.96146 0.97663 0.90637 1.21685 0.96160 1.00909 1.00350 0.93846 0.92349 0.95351 0.92307 0.95377 0.93098 0.85423 0.94036 0.93106 0.91357 0.91237 0.89800 0.91426 0.93932 0.91174 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.73 71.98 0.70 -4.34 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.90 16 3 C 0.22 11.29 1.99 44.17 0.09 11.38 16 4 H -0.01 -0.44 7.37 -2.39 -0.02 -0.46 16 5 C -0.55 -29.59 7.92 25.60 0.20 -29.39 16 6 H 0.05 2.90 6.12 -2.91 -0.02 2.89 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.96 11.30 21.45 0.24 -52.72 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.67 -28.09 5.53 -469.61 -2.60 -30.69 16 14 C 0.10 3.54 2.81 45.64 0.13 3.67 16 15 H 0.04 1.74 7.08 -2.39 -0.02 1.73 16 16 C -0.15 -5.17 5.97 31.32 0.19 -4.98 16 17 C -0.12 -3.08 6.83 31.67 0.22 -2.87 16 18 C -0.11 -2.67 6.33 31.89 0.20 -2.46 16 19 C -0.08 -2.33 3.16 -9.72 -0.03 -2.36 16 20 H 0.08 2.20 8.05 -2.38 -0.02 2.18 16 21 C -0.13 -3.55 9.12 71.98 0.66 -2.89 16 22 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 3.25 5.97 -2.39 -0.01 3.23 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.33 13.62 7.74 -89.70 -0.69 12.92 16 29 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.05 2.00 5.78 -2.39 -0.01 1.99 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -57.74 286.04 2.96 -54.78 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.32 Total: 20.47 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 2.97 Total: -37.76 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.36 Total: -83.40 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -57.74 2.96 -54.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251370249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.530 kcal (2) G-P(sol) polarization free energy of solvation -57.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds