Wall clock time and date at job start Sun Mar 29 2020 21:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47386 * 2 1 4 4 H 1.09000 * 109.47111 * 306.10102 * 3 2 1 5 5 C 1.50695 * 109.47689 * 186.09937 * 3 2 1 6 6 H 1.08004 * 120.00285 * 245.52532 * 5 3 2 7 7 C 1.37882 * 120.00108 * 65.51921 * 5 3 2 8 8 N 1.31508 * 120.00184 * 191.99898 * 7 5 3 9 9 Si 1.86797 * 119.99739 * 12.00356 * 7 5 3 10 10 H 1.48507 * 109.47229 * 86.51912 * 9 7 5 11 11 H 1.48496 * 109.47453 * 206.51961 * 9 7 5 12 12 H 1.48498 * 109.47204 * 326.52281 * 9 7 5 13 13 N 1.46904 * 109.47222 * 66.09935 * 3 2 1 14 14 C 1.46906 * 111.00103 * 207.21399 * 13 3 2 15 15 H 1.08999 * 110.01330 * 328.73939 * 14 13 3 16 16 C 1.54263 * 110.03121 * 90.17925 * 14 13 3 17 17 C 1.54892 * 104.19308 * 142.89296 * 16 14 13 18 18 C 1.54882 * 102.75140 * 322.05869 * 17 16 14 19 19 C 1.53876 * 110.02817 * 207.34532 * 14 13 3 20 20 H 1.09007 * 110.02813 * 121.43318 * 19 14 13 21 21 C 1.52997 * 110.03334 * 0.04834 * 19 14 13 22 22 H 1.08994 * 109.46965 * 294.26429 * 1 2 3 23 23 H 1.08998 * 109.47269 * 54.26561 * 1 2 3 24 24 H 1.09004 * 109.46974 * 174.26673 * 1 2 3 25 25 H 1.08996 * 109.47575 * 120.00425 * 2 1 3 26 26 H 1.09002 * 109.47316 * 239.99763 * 2 1 3 27 27 H 0.97009 * 120.00076 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99665 * 331.16275 * 13 3 2 29 29 H 1.08997 * 110.48410 * 261.57286 * 16 14 13 30 30 H 1.08997 * 110.48850 * 24.21395 * 16 14 13 31 31 H 1.08998 * 110.75539 * 203.74006 * 17 16 14 32 32 H 1.09009 * 110.75458 * 80.37295 * 17 16 14 33 33 H 1.09000 * 110.48588 * 279.26594 * 18 17 16 34 34 H 1.09002 * 110.60413 * 156.67572 * 18 17 16 35 35 H 1.08998 * 109.47263 * 60.00146 * 21 19 14 36 36 H 1.09001 * 109.46637 * 179.97438 * 21 19 14 37 37 H 1.09000 * 109.47398 * 299.99900 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5902 1.9868 -0.8303 5 6 3.5394 1.4452 -0.1510 6 1 4.1627 1.8033 0.6551 7 6 4.1156 0.9904 -1.3181 8 7 5.4109 0.7692 -1.3692 9 14 3.0563 0.6887 -2.8268 10 1 2.9159 1.9525 -3.5940 11 1 3.6966 -0.3416 -3.6833 12 1 1.7141 0.2155 -2.4027 13 7 1.6742 2.0912 1.2662 14 6 1.5412 3.5440 1.0942 15 1 2.2252 3.8923 0.3203 16 6 0.0886 3.9006 0.7166 17 6 -0.1807 5.2330 1.4590 18 6 0.5566 5.0291 2.8057 19 6 1.8387 4.2614 2.4226 20 1 2.6667 4.9586 2.2931 21 6 2.1812 3.2371 3.5062 22 1 -0.3633 0.4223 0.9368 23 1 -0.3634 0.6002 -0.8342 24 1 -0.3633 -1.0226 -0.1027 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 5.8164 0.4496 -2.1905 28 1 0.8281 1.6930 1.6453 29 1 -0.0024 4.0390 -0.3608 30 1 -0.5964 3.1263 1.0618 31 1 -1.2491 5.3757 1.6213 32 1 0.2434 6.0738 0.9099 33 1 -0.0528 4.4369 3.4884 34 1 0.8072 5.9900 3.2552 35 1 3.0590 2.6667 3.2027 36 1 2.3906 3.7548 4.4423 37 1 1.3384 2.5601 3.6457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251370251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:26 Heat of formation + Delta-G solvation = -16.177129 kcal Electronic energy + Delta-G solvation = -15021.103392 eV Core-core repulsion = 12797.514885 eV Total energy + Delta-G solvation = -2223.588508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.64997 -35.55156 -32.06422 -31.10077 -30.60229 -27.54704 -25.69272 -24.28748 -22.44607 -20.48817 -19.77502 -18.54462 -16.66714 -15.72907 -15.13208 -14.40335 -14.01141 -13.62437 -13.15962 -12.91537 -12.65873 -12.46735 -11.95066 -11.91908 -11.62044 -11.34770 -10.90468 -10.81360 -10.53051 -10.47863 -10.29055 -10.20681 -10.11747 -9.87542 -9.74386 -9.32726 -9.10050 -8.43485 -7.20574 -6.00720 -3.93915 3.29830 3.38945 3.41010 4.46822 4.94154 4.97872 5.05879 5.26625 5.42505 5.68832 5.80639 5.85481 5.89452 5.91477 5.96122 5.99971 6.06890 6.11045 6.15256 6.24130 6.37494 6.47819 6.54283 6.57978 6.70003 6.74739 6.81138 6.93072 7.04189 7.11128 7.30266 7.83877 8.10881 8.37946 8.84439 9.15705 9.65703 11.12864 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.010253 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.171232 B = 2730.122633 C = 2928.878171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.192 3.808 4 H -0.006 1.006 5 C -0.495 4.495 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.250 1.250 13 N -0.664 5.664 14 C 0.093 3.907 15 H 0.083 0.917 16 C -0.153 4.153 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.087 4.087 20 H 0.064 0.936 21 C -0.117 4.117 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.318 0.682 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 5.118 5.148 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.084 3.916 4 H 0.012 0.988 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.175 1.175 13 N -0.293 5.293 14 C -0.018 4.018 15 H 0.101 0.899 16 C -0.192 4.192 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.106 4.106 20 H 0.083 0.917 21 C -0.175 4.175 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.346 5.055 5.248 12.655 hybrid contribution -1.301 -0.126 -1.562 2.037 sum -11.648 4.929 3.686 13.174 Atomic orbital electron populations 1.21906 0.98718 1.00226 1.00315 1.22207 0.92385 1.00432 1.02188 1.19537 0.96553 0.89358 0.86187 0.98802 1.21033 0.89318 1.41398 1.01581 0.90292 1.24931 0.94673 0.95112 0.98515 1.69946 1.10560 1.45958 1.27271 0.87383 0.82233 0.78072 0.83865 1.20872 1.21650 1.17481 1.60697 1.37694 1.01519 1.29419 1.22150 0.93679 0.89634 0.96352 0.89917 1.23162 0.98910 0.97252 0.99867 1.22408 0.99288 0.97681 0.96628 1.22474 0.97041 0.99554 0.96778 1.21758 0.96314 0.96685 0.95867 0.91700 1.21485 1.02753 0.97893 0.95367 0.93569 0.93854 0.93902 0.91960 0.91819 0.92900 0.86324 0.92318 0.92111 0.92457 0.91827 0.92025 0.92480 0.90941 0.95258 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.66 37.15 0.36 -2.30 16 2 C -0.13 -2.85 4.77 -26.74 -0.13 -2.97 16 3 C 0.19 4.42 1.42 -68.87 -0.10 4.33 16 4 H -0.01 -0.13 6.59 -51.93 -0.34 -0.47 16 5 C -0.49 -13.83 9.10 -34.44 -0.31 -14.14 16 6 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 7 C 0.07 1.98 5.37 -17.82 -0.10 1.88 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.86 21.18 25.83 -169.99 -4.39 16.79 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.25 -5.76 5.27 56.52 0.30 -5.46 16 13 N -0.66 -13.13 4.20 -99.78 -0.42 -13.55 16 14 C 0.09 1.67 2.98 -66.59 -0.20 1.48 16 15 H 0.08 1.73 7.72 -51.93 -0.40 1.33 16 16 C -0.15 -2.33 6.48 -25.07 -0.16 -2.49 16 17 C -0.12 -1.57 6.91 -24.74 -0.17 -1.75 16 18 C -0.12 -1.57 6.36 -25.08 -0.16 -1.73 16 19 C -0.09 -1.37 3.50 -89.50 -0.31 -1.69 16 20 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 21 C -0.12 -1.87 8.06 37.16 0.30 -1.57 16 22 H 0.05 0.71 6.68 -51.93 -0.35 0.37 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.45 4.64 -51.93 -0.24 1.21 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.32 5.71 5.61 -39.29 -0.22 5.49 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.35 7.81 -51.93 -0.41 0.95 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.74 7.56 -51.93 -0.39 0.35 16 LS Contribution 279.68 15.07 4.21 4.21 Total: -1.00 -29.04 279.68 -7.42 -36.46 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.61 Total: 3.89 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.98 Total: -20.95 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.35 Total: -40.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.39 Total: 16.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.04 -7.42 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251370251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.279 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds