Wall clock time and date at job start Sun Mar 29 2020 21:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47386 * 2 1 4 4 H 1.09000 * 109.47111 * 306.10102 * 3 2 1 5 5 C 1.50695 * 109.47689 * 186.09937 * 3 2 1 6 6 H 1.08004 * 120.00285 * 245.52532 * 5 3 2 7 7 C 1.37882 * 120.00108 * 65.51921 * 5 3 2 8 8 N 1.31508 * 120.00184 * 191.99898 * 7 5 3 9 9 Si 1.86797 * 119.99739 * 12.00356 * 7 5 3 10 10 H 1.48507 * 109.47229 * 86.51912 * 9 7 5 11 11 H 1.48496 * 109.47453 * 206.51961 * 9 7 5 12 12 H 1.48498 * 109.47204 * 326.52281 * 9 7 5 13 13 N 1.46904 * 109.47222 * 66.09935 * 3 2 1 14 14 C 1.46906 * 111.00103 * 207.21399 * 13 3 2 15 15 H 1.08999 * 110.01330 * 328.73939 * 14 13 3 16 16 C 1.54263 * 110.03121 * 90.17925 * 14 13 3 17 17 C 1.54892 * 104.19308 * 142.89296 * 16 14 13 18 18 C 1.54882 * 102.75140 * 322.05869 * 17 16 14 19 19 C 1.53876 * 110.02817 * 207.34532 * 14 13 3 20 20 H 1.09007 * 110.02813 * 121.43318 * 19 14 13 21 21 C 1.52997 * 110.03334 * 0.04834 * 19 14 13 22 22 H 1.08994 * 109.46965 * 294.26429 * 1 2 3 23 23 H 1.08998 * 109.47269 * 54.26561 * 1 2 3 24 24 H 1.09004 * 109.46974 * 174.26673 * 1 2 3 25 25 H 1.08996 * 109.47575 * 120.00425 * 2 1 3 26 26 H 1.09002 * 109.47316 * 239.99763 * 2 1 3 27 27 H 0.97009 * 120.00076 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99665 * 331.16275 * 13 3 2 29 29 H 1.08997 * 110.48410 * 261.57286 * 16 14 13 30 30 H 1.08997 * 110.48850 * 24.21395 * 16 14 13 31 31 H 1.08998 * 110.75539 * 203.74006 * 17 16 14 32 32 H 1.09009 * 110.75458 * 80.37295 * 17 16 14 33 33 H 1.09000 * 110.48588 * 279.26594 * 18 17 16 34 34 H 1.09002 * 110.60413 * 156.67572 * 18 17 16 35 35 H 1.08998 * 109.47263 * 60.00146 * 21 19 14 36 36 H 1.09001 * 109.46637 * 179.97438 * 21 19 14 37 37 H 1.09000 * 109.47398 * 299.99900 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5902 1.9868 -0.8303 5 6 3.5394 1.4452 -0.1510 6 1 4.1627 1.8033 0.6551 7 6 4.1156 0.9904 -1.3181 8 7 5.4109 0.7692 -1.3692 9 14 3.0563 0.6887 -2.8268 10 1 2.9159 1.9525 -3.5940 11 1 3.6966 -0.3416 -3.6833 12 1 1.7141 0.2155 -2.4027 13 7 1.6742 2.0912 1.2662 14 6 1.5412 3.5440 1.0942 15 1 2.2252 3.8923 0.3203 16 6 0.0886 3.9006 0.7166 17 6 -0.1807 5.2330 1.4590 18 6 0.5566 5.0291 2.8057 19 6 1.8387 4.2614 2.4226 20 1 2.6667 4.9586 2.2931 21 6 2.1812 3.2371 3.5062 22 1 -0.3633 0.4223 0.9368 23 1 -0.3634 0.6002 -0.8342 24 1 -0.3633 -1.0226 -0.1027 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 5.8164 0.4496 -2.1905 28 1 0.8281 1.6930 1.6453 29 1 -0.0024 4.0390 -0.3608 30 1 -0.5964 3.1263 1.0618 31 1 -1.2491 5.3757 1.6213 32 1 0.2434 6.0738 0.9099 33 1 -0.0528 4.4369 3.4884 34 1 0.8072 5.9900 3.2552 35 1 3.0590 2.6667 3.2027 36 1 2.3906 3.7548 4.4423 37 1 1.3384 2.5601 3.6457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251370251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:26 Heat of formation + Delta-G solvation = -34.249722 kcal Electronic energy + Delta-G solvation = -15021.887079 eV Core-core repulsion = 12797.514885 eV Total energy + Delta-G solvation = -2224.372194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02657 -37.18852 -34.20890 -32.51312 -31.88885 -29.29815 -27.21431 -25.60548 -24.21076 -21.62130 -21.58384 -19.92013 -18.80011 -17.18772 -16.67946 -16.04435 -15.69027 -15.05572 -14.73256 -14.35934 -14.23032 -13.93094 -13.56294 -13.50523 -12.91366 -12.77309 -12.71191 -12.28758 -12.16561 -11.93982 -11.75833 -11.54924 -11.43087 -11.28902 -11.24226 -11.13480 -11.03501 -10.59954 -8.84078 -8.25409 -6.23169 1.32203 1.34920 1.44211 2.35966 3.07921 3.56535 3.78163 3.86337 4.15089 4.38195 4.41815 4.48596 4.51145 4.61419 4.68073 4.76781 4.83777 4.84502 4.92465 5.00657 5.11451 5.16250 5.16731 5.19225 5.28424 5.33981 5.41886 5.49422 5.53923 5.61913 5.74186 5.83709 6.18590 6.63901 6.83890 7.07315 7.41088 8.92219 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.010253 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.171232 B = 2730.122633 C = 2928.878171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.200 3.800 4 H -0.009 1.009 5 C -0.497 4.497 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.924 3.076 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.218 1.218 13 N -0.669 5.669 14 C 0.087 3.913 15 H 0.040 0.960 16 C -0.147 4.147 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.090 4.090 20 H 0.052 0.948 21 C -0.110 4.110 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.753 5.462 5.451 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.090 3.910 4 H 0.008 0.992 5 C -0.536 4.536 6 H 0.045 0.955 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.748 3.252 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.141 1.141 13 N -0.301 5.301 14 C -0.024 4.024 15 H 0.059 0.941 16 C -0.186 4.186 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.109 4.109 20 H 0.070 0.930 21 C -0.168 4.168 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.963 5.409 5.576 15.979 hybrid contribution -0.072 -0.189 -1.549 1.562 sum -14.035 5.220 4.027 15.506 Atomic orbital electron populations 1.21816 0.94812 1.02047 1.01603 1.22073 0.95817 0.98199 1.01073 1.19306 0.93060 0.91091 0.87507 0.99182 1.21307 0.91980 1.40232 1.00067 0.95488 1.25796 0.95915 0.95112 1.01942 1.70111 1.12871 1.47993 1.28237 0.86300 0.81813 0.77888 0.79194 1.20767 1.21662 1.14068 1.60533 1.38898 1.02662 1.27973 1.22174 0.95115 0.88520 0.96597 0.94134 1.23070 0.96500 0.99143 0.99904 1.22401 1.00894 0.96121 0.95897 1.22410 0.95115 1.00031 0.97224 1.21765 0.97916 0.96559 0.94643 0.92955 1.21388 1.01271 0.97846 0.96272 0.91589 0.93484 0.91654 0.92780 0.93400 0.92916 0.84635 0.92956 0.90816 0.89833 0.91740 0.90662 0.90737 0.94908 0.93125 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.66 71.98 0.70 -3.75 16 2 C -0.13 -5.47 4.77 30.59 0.15 -5.32 16 3 C 0.20 9.20 1.42 44.16 0.06 9.26 16 4 H -0.01 -0.44 6.59 -2.39 -0.02 -0.45 16 5 C -0.50 -29.06 9.10 25.60 0.23 -28.83 16 6 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.52 5.37 84.66 0.45 0.97 16 8 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 9 Si 0.92 44.25 25.83 68.60 1.77 46.02 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.22 -9.24 5.27 99.48 0.52 -8.72 16 13 N -0.67 -26.39 4.20 -469.60 -1.97 -28.36 16 14 C 0.09 3.11 2.98 45.64 0.14 3.25 16 15 H 0.04 1.77 7.72 -2.39 -0.02 1.75 16 16 C -0.15 -4.11 6.48 31.67 0.21 -3.91 16 17 C -0.12 -2.56 6.91 31.88 0.22 -2.34 16 18 C -0.11 -2.50 6.36 31.67 0.20 -2.29 16 19 C -0.09 -2.76 3.50 -10.07 -0.04 -2.79 16 20 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 21 C -0.11 -3.43 8.06 71.98 0.58 -2.85 16 22 H 0.07 1.75 6.68 -2.39 -0.02 1.74 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 26 H 0.05 2.09 4.64 -2.39 -0.01 2.08 16 27 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 28 H 0.33 11.29 5.61 -89.70 -0.50 10.78 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.89 7.52 -2.39 -0.02 1.87 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.54 7.84 -2.39 -0.02 1.53 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 1.26 7.81 -2.39 -0.02 1.24 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.64 7.56 -2.39 -0.02 1.62 16 Total: -1.00 -66.45 279.68 3.33 -63.12 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.33 Total: 18.67 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.90 Total: -38.62 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -1.67 Total: -89.19 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.77 Total: 46.02 kcal Total: -66.45 3.33 -63.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251370251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.867 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds