Wall clock time and date at job start Sun Mar 29 2020 21:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 C 1.53006 * 109.46980 * 239.99999 * 2 1 3 5 5 C 1.52997 * 109.46980 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47330 * 60.00043 * 5 4 2 7 7 H 1.09004 * 109.47044 * 59.99900 * 6 5 4 8 8 N 1.46498 * 109.47237 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00126 * 60.00222 * 8 6 5 10 10 C 1.36935 * 119.99969 * 240.00025 * 8 6 5 11 11 H 1.07996 * 120.00377 * 23.08499 * 10 8 6 12 12 C 1.38820 * 119.99961 * 203.09039 * 10 8 6 13 13 N 1.31622 * 119.99996 * 11.66841 * 12 10 8 14 14 Si 1.86797 * 119.99858 * 191.67265 * 12 10 8 15 15 H 1.48494 * 109.47313 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47073 * 119.99868 * 14 12 10 17 17 H 1.48494 * 109.47173 * 239.99697 * 14 12 10 18 18 C 1.53006 * 109.47054 * 299.99912 * 6 5 4 19 19 C 1.52997 * 109.46980 * 59.99874 * 18 6 5 20 20 H 1.09004 * 109.47138 * 59.99999 * 19 18 6 21 21 C 1.52997 * 109.47122 * 180.02562 * 19 18 6 22 22 H 1.09000 * 109.47057 * 300.00079 * 1 2 3 23 23 H 1.09004 * 109.47322 * 59.99683 * 1 2 3 24 24 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46881 * 299.99944 * 4 2 1 26 26 H 1.09004 * 109.46834 * 60.00019 * 4 2 1 27 27 H 1.08999 * 109.47149 * 180.02562 * 5 4 2 28 28 H 1.09004 * 109.47138 * 300.00001 * 5 4 2 29 29 H 1.08995 * 109.47096 * 93.87499 * 9 8 6 30 30 H 1.08996 * 109.47252 * 213.88426 * 9 8 6 31 31 H 1.09007 * 109.46764 * 333.87852 * 9 8 6 32 32 H 0.97001 * 119.99746 * 180.02562 * 13 12 10 33 33 H 1.08991 * 109.46881 * 299.99930 * 18 6 5 34 34 H 1.09004 * 109.46834 * 179.97438 * 18 6 5 35 35 H 1.08995 * 109.47290 * 59.99771 * 21 19 18 36 36 H 1.08996 * 109.47642 * 180.02562 * 21 19 18 37 37 H 1.09010 * 109.47127 * 300.00150 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0002 8 7 5.5455 -1.4416 -0.0011 9 6 6.2780 -0.1728 -0.0017 10 6 6.2302 -2.6275 -0.0010 11 1 5.7549 -3.5254 -0.3673 12 6 7.5351 -2.6755 0.4699 13 7 8.0370 -1.6493 1.1239 14 14 8.5790 -4.1963 0.1754 15 1 7.7874 -5.2017 -0.5780 16 1 9.7840 -3.8253 -0.6093 17 1 8.9954 -4.7711 1.4797 18 6 3.5705 -0.7203 1.2489 19 6 2.0405 -0.7209 1.2492 20 1 1.6776 -1.7487 1.2494 21 6 1.5306 0.0009 2.4981 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2492 26 1 1.6766 -0.2074 -2.1393 27 1 3.9333 -1.2342 -2.1398 28 1 3.9329 0.3071 -1.2499 29 1 6.5203 0.1073 1.0234 30 1 7.1982 -0.2849 -0.5750 31 1 5.6603 0.6031 -0.4541 32 1 8.9490 -1.6828 1.4526 33 1 3.9335 0.3074 1.2486 34 1 3.9339 -1.2342 2.1389 35 1 1.8935 1.0287 2.4974 36 1 0.4406 0.0002 2.4986 37 1 1.8943 -0.5123 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251874975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:39 Heat of formation + Delta-G solvation = -9.247106 kcal Electronic energy + Delta-G solvation = -14948.349771 eV Core-core repulsion = 12725.061772 eV Total energy + Delta-G solvation = -2223.287999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.81112 -35.26893 -32.19284 -31.58871 -29.65470 -26.64062 -25.87926 -24.97896 -22.33996 -21.33021 -19.56108 -18.79961 -16.60828 -15.03405 -14.44112 -14.22952 -14.03621 -13.69660 -13.60849 -12.79452 -12.23355 -12.15263 -12.04543 -11.75800 -11.52435 -11.27752 -10.96473 -10.82846 -10.67811 -10.48821 -10.36352 -10.24901 -10.05309 -10.01365 -9.65589 -9.43330 -9.29947 -8.45817 -6.62642 -5.63502 -3.08688 3.41850 3.48784 3.50990 4.55456 5.00180 5.10109 5.14532 5.44163 5.54180 5.63130 5.70098 5.75443 5.80058 5.94641 5.98050 6.03016 6.15724 6.17343 6.26631 6.32094 6.38626 6.43612 6.48621 6.63455 6.71162 6.80283 6.89954 6.92939 7.19833 7.22774 7.50482 7.83212 7.89161 8.50446 9.34017 9.98714 10.48572 11.41373 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049343 B = 0.007933 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.325338 B = 3528.671117 C = 3655.265093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.131 4.131 6 C 0.179 3.821 7 H 0.058 0.942 8 N -0.599 5.599 9 C 0.165 3.835 10 C -0.249 4.249 11 H 0.067 0.933 12 C -0.001 4.001 13 N -0.909 5.909 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.291 1.291 18 C -0.122 4.122 19 C -0.085 4.085 20 H 0.064 0.936 21 C -0.146 4.146 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.040 0.960 31 H -0.003 1.003 32 H 0.250 0.750 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 3.542 -1.473 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.171 4.171 6 C 0.071 3.929 7 H 0.076 0.924 8 N -0.320 5.320 9 C 0.020 3.980 10 C -0.379 4.379 11 H 0.085 0.915 12 C -0.199 4.199 13 N -0.555 5.555 14 Si 0.733 3.267 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.218 1.218 18 C -0.162 4.162 19 C -0.104 4.104 20 H 0.082 0.918 21 C -0.203 4.203 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.295 3.553 -1.412 12.876 hybrid contribution 0.740 -0.737 -0.032 1.045 sum -11.555 2.816 -1.444 11.980 Atomic orbital electron populations 1.21895 0.96151 1.01390 1.01014 1.21149 0.94445 0.99582 0.95199 0.91662 1.21553 0.96610 0.99963 0.96568 1.22055 0.93594 1.01214 1.00225 1.20324 0.84677 0.96799 0.91100 0.92415 1.43973 0.99059 1.03080 1.85913 1.20713 0.93498 0.84806 0.98944 1.19295 0.95930 0.87986 1.34700 0.91530 1.25023 0.98879 0.97445 0.98571 1.70085 1.15171 1.30327 1.39937 0.86207 0.80471 0.82677 0.77362 1.20404 1.21728 1.21833 1.22126 0.92508 1.01076 1.00484 1.21167 0.96713 0.98903 0.93636 0.91776 1.21880 1.00103 1.00441 0.97907 0.92768 0.93319 0.93000 0.92476 0.93002 0.92491 0.92641 0.95612 0.94133 0.98419 0.93969 0.92840 0.92237 0.93085 0.93128 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.84 37.16 0.33 -1.33 16 2 C -0.09 -1.17 2.25 -90.62 -0.20 -1.37 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.58 5.20 -26.73 -0.14 -1.72 16 5 C -0.13 -2.38 5.19 -26.73 -0.14 -2.52 16 6 C 0.18 3.77 2.59 -67.93 -0.18 3.60 16 7 H 0.06 1.25 7.86 -51.93 -0.41 0.84 16 8 N -0.60 -15.44 2.81 -173.48 -0.49 -15.93 16 9 C 0.17 4.21 8.01 59.85 0.48 4.69 16 10 C -0.25 -7.05 9.59 -15.06 -0.14 -7.19 16 11 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 12 C 0.00 -0.04 5.12 -17.43 -0.09 -0.13 16 13 N -0.91 -27.21 10.65 55.49 0.59 -26.62 16 14 Si 0.90 22.35 29.57 -169.99 -5.03 17.33 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 C -0.12 -2.33 4.49 -26.73 -0.12 -2.45 16 19 C -0.09 -1.28 2.25 -90.62 -0.20 -1.48 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.15 -1.92 8.84 37.16 0.33 -1.60 16 22 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.02 6.66 -51.93 -0.35 0.68 16 29 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 30 H 0.04 1.11 7.23 -51.93 -0.38 0.74 16 31 H 0.00 -0.06 6.43 -51.93 -0.33 -0.39 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 37 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 280.39 15.07 4.23 4.23 Total: -1.00 -29.46 280.39 -7.46 -36.92 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -6.69 Total: -4.42 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.08 Total: -11.50 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.10 Total: -42.55 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.46 -7.46 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251874975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.672 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds