Wall clock time and date at job start Sun Mar 29 2020 21:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 C 1.53006 * 109.46980 * 239.99999 * 2 1 3 5 5 C 1.52997 * 109.46980 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47330 * 60.00043 * 5 4 2 7 7 H 1.09004 * 109.47044 * 59.99900 * 6 5 4 8 8 N 1.46498 * 109.47237 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00126 * 60.00222 * 8 6 5 10 10 C 1.36935 * 119.99969 * 240.00025 * 8 6 5 11 11 H 1.07996 * 120.00377 * 23.08499 * 10 8 6 12 12 C 1.38820 * 119.99961 * 203.09039 * 10 8 6 13 13 N 1.31622 * 119.99996 * 11.66841 * 12 10 8 14 14 Si 1.86797 * 119.99858 * 191.67265 * 12 10 8 15 15 H 1.48494 * 109.47313 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47073 * 119.99868 * 14 12 10 17 17 H 1.48494 * 109.47173 * 239.99697 * 14 12 10 18 18 C 1.53006 * 109.47054 * 299.99912 * 6 5 4 19 19 C 1.52997 * 109.46980 * 59.99874 * 18 6 5 20 20 H 1.09004 * 109.47138 * 59.99999 * 19 18 6 21 21 C 1.52997 * 109.47122 * 180.02562 * 19 18 6 22 22 H 1.09000 * 109.47057 * 300.00079 * 1 2 3 23 23 H 1.09004 * 109.47322 * 59.99683 * 1 2 3 24 24 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46881 * 299.99944 * 4 2 1 26 26 H 1.09004 * 109.46834 * 60.00019 * 4 2 1 27 27 H 1.08999 * 109.47149 * 180.02562 * 5 4 2 28 28 H 1.09004 * 109.47138 * 300.00001 * 5 4 2 29 29 H 1.08995 * 109.47096 * 93.87499 * 9 8 6 30 30 H 1.08996 * 109.47252 * 213.88426 * 9 8 6 31 31 H 1.09007 * 109.46764 * 333.87852 * 9 8 6 32 32 H 0.97001 * 119.99746 * 180.02562 * 13 12 10 33 33 H 1.08991 * 109.46881 * 299.99930 * 18 6 5 34 34 H 1.09004 * 109.46834 * 179.97438 * 18 6 5 35 35 H 1.08995 * 109.47290 * 59.99771 * 21 19 18 36 36 H 1.08996 * 109.47642 * 180.02562 * 21 19 18 37 37 H 1.09010 * 109.47127 * 300.00150 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0002 8 7 5.5455 -1.4416 -0.0011 9 6 6.2780 -0.1728 -0.0017 10 6 6.2302 -2.6275 -0.0010 11 1 5.7549 -3.5254 -0.3673 12 6 7.5351 -2.6755 0.4699 13 7 8.0370 -1.6493 1.1239 14 14 8.5790 -4.1963 0.1754 15 1 7.7874 -5.2017 -0.5780 16 1 9.7840 -3.8253 -0.6093 17 1 8.9954 -4.7711 1.4797 18 6 3.5705 -0.7203 1.2489 19 6 2.0405 -0.7209 1.2492 20 1 1.6776 -1.7487 1.2494 21 6 1.5306 0.0009 2.4981 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2492 26 1 1.6766 -0.2074 -2.1393 27 1 3.9333 -1.2342 -2.1398 28 1 3.9329 0.3071 -1.2499 29 1 6.5203 0.1073 1.0234 30 1 7.1982 -0.2849 -0.5750 31 1 5.6603 0.6031 -0.4541 32 1 8.9490 -1.6828 1.4526 33 1 3.9335 0.3074 1.2486 34 1 3.9339 -1.2342 2.1389 35 1 1.8935 1.0287 2.4974 36 1 0.4406 0.0002 2.4986 37 1 1.8943 -0.5123 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251874975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:39 Heat of formation + Delta-G solvation = -25.124242 kcal Electronic energy + Delta-G solvation = -14949.038256 eV Core-core repulsion = 12725.061772 eV Total energy + Delta-G solvation = -2223.976484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21235 -37.07281 -33.95421 -32.92113 -31.38693 -28.09268 -27.87421 -26.36293 -24.14048 -22.62279 -20.93206 -20.34991 -18.71293 -17.00119 -15.90935 -15.74677 -15.43780 -15.15361 -14.92449 -14.55839 -14.04201 -13.67230 -13.40120 -12.96435 -12.81119 -12.75106 -12.60717 -12.55312 -12.33613 -12.16181 -12.10833 -11.98202 -11.69674 -11.44398 -11.25633 -10.86807 -10.80341 -10.58024 -8.73482 -7.81717 -5.29664 1.44470 1.44992 1.56096 2.50358 3.30768 3.62183 3.82402 3.94406 4.17295 4.27863 4.32955 4.58488 4.61997 4.67917 4.75465 4.79541 4.84376 4.90001 5.01687 5.03912 5.11445 5.20062 5.23511 5.24524 5.27456 5.36087 5.43702 5.50366 5.59638 5.63323 5.67440 5.74677 5.75588 6.35203 7.16789 7.91183 8.35470 9.21713 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049343 B = 0.007933 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.325338 B = 3528.671117 C = 3655.265093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.063 0.937 4 C -0.102 4.102 5 C -0.122 4.122 6 C 0.172 3.828 7 H 0.047 0.953 8 N -0.616 5.616 9 C 0.184 3.816 10 C -0.262 4.262 11 H 0.068 0.932 12 C -0.057 4.057 13 N -0.941 5.941 14 Si 0.969 3.031 15 H -0.266 1.266 16 H -0.290 1.290 17 H -0.292 1.292 18 C -0.112 4.112 19 C -0.080 4.080 20 H 0.065 0.935 21 C -0.142 4.142 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.050 0.950 29 H -0.002 1.002 30 H 0.012 0.988 31 H 0.027 0.973 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 3.499 -2.153 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.140 4.140 5 C -0.161 4.161 6 C 0.065 3.935 7 H 0.066 0.934 8 N -0.338 5.338 9 C 0.039 3.961 10 C -0.392 4.392 11 H 0.086 0.914 12 C -0.252 4.252 13 N -0.589 5.589 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.217 1.217 17 H -0.219 1.219 18 C -0.151 4.151 19 C -0.099 4.099 20 H 0.083 0.917 21 C -0.200 4.200 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.016 0.984 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.479 3.508 -2.103 15.045 hybrid contribution 1.378 -0.719 0.174 1.565 sum -13.100 2.789 -1.929 13.532 Atomic orbital electron populations 1.21838 0.93567 1.02145 1.02306 1.21124 0.96505 0.98889 0.93556 0.91861 1.21527 0.93445 1.00881 0.98187 1.21906 0.96461 1.00001 0.97733 1.20569 0.82197 0.97134 0.93576 0.93429 1.44246 1.01093 1.02388 1.86102 1.20395 0.92988 0.85735 0.96994 1.19634 0.96536 0.88915 1.34140 0.91433 1.25819 1.00114 1.00473 0.98753 1.70254 1.15196 1.32291 1.41130 0.85162 0.78585 0.79418 0.77068 1.19080 1.21708 1.21864 1.21954 0.95827 0.99459 0.97892 1.21122 0.93256 0.99734 0.95760 0.91652 1.21846 1.01687 0.99980 0.96447 0.91678 0.91941 0.92510 0.91981 0.90714 0.93612 0.93098 0.98362 0.96873 0.95482 0.94384 0.93797 0.95340 0.93029 0.90522 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.84 71.98 0.64 -1.95 16 2 C -0.08 -2.00 2.25 -10.79 -0.02 -2.02 16 3 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 4 C -0.10 -2.69 5.20 30.60 0.16 -2.53 16 5 C -0.12 -4.27 5.19 30.59 0.16 -4.11 16 6 C 0.17 7.26 2.59 44.99 0.12 7.38 16 7 H 0.05 2.08 7.86 -2.38 -0.02 2.06 16 8 N -0.62 -32.45 2.81 -702.77 -1.98 -34.43 16 9 C 0.18 9.64 8.01 127.77 1.02 10.66 16 10 C -0.26 -15.07 9.59 84.04 0.81 -14.27 16 11 H 0.07 3.79 7.82 -2.91 -0.02 3.76 16 12 C -0.06 -3.33 5.12 84.86 0.43 -2.89 16 13 N -0.94 -57.93 10.65 21.65 0.23 -57.70 16 14 Si 0.97 46.60 29.57 68.60 2.03 48.62 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 C -0.11 -4.27 4.49 30.60 0.14 -4.13 16 19 C -0.08 -2.25 2.25 -10.80 -0.02 -2.27 16 20 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 21 C -0.14 -3.43 8.84 71.98 0.64 -2.80 16 22 H 0.06 1.07 6.43 -2.39 -0.02 1.05 16 23 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.81 6.66 -2.38 -0.02 1.80 16 29 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 30 H 0.01 0.72 7.23 -2.39 -0.02 0.70 16 31 H 0.03 1.22 6.43 -2.38 -0.02 1.21 16 32 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.04 1.73 7.67 -2.39 -0.02 1.71 16 34 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16 37 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -64.25 280.39 5.34 -58.91 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.00 Total: 3.53 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.06 Total: -18.94 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -1.75 Total: -92.13 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -64.25 5.34 -58.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251874975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.789 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds