Wall clock time and date at job start Sun Mar 29 2020 21:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47167 * 240.00117 * 2 1 3 5 5 C 1.52999 * 109.47167 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.46914 * 60.00309 * 5 4 2 7 7 H 1.09000 * 109.47653 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47275 * 59.99567 * 6 5 4 9 9 C 1.46500 * 119.99685 * 23.78667 * 8 6 5 10 10 C 1.36938 * 120.00089 * 203.50336 * 8 6 5 11 11 H 1.07997 * 119.99723 * 143.33187 * 10 8 6 12 12 C 1.38807 * 120.00179 * 323.32929 * 10 8 6 13 13 N 1.31615 * 120.00271 * 164.09512 * 12 10 8 14 14 Si 1.86806 * 120.00189 * 344.09720 * 12 10 8 15 15 H 1.48496 * 109.46967 * 95.23281 * 14 12 10 16 16 H 1.48498 * 109.47050 * 215.23760 * 14 12 10 17 17 H 1.48505 * 109.46800 * 335.23580 * 14 12 10 18 18 C 1.53003 * 109.47356 * 300.00177 * 6 5 4 19 19 C 1.52994 * 109.46914 * 120.00426 * 2 1 3 20 20 H 1.08998 * 109.47536 * 59.99781 * 19 2 1 21 21 C 1.53001 * 109.46951 * 299.99824 * 19 2 1 22 22 H 1.09003 * 109.47030 * 300.00196 * 1 2 3 23 23 H 1.09008 * 109.47201 * 59.99360 * 1 2 3 24 24 H 1.08999 * 109.47509 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47394 * 300.00669 * 4 2 1 26 26 H 1.09008 * 109.46632 * 60.00175 * 4 2 1 27 27 H 1.08996 * 109.47050 * 300.00398 * 5 4 2 28 28 H 1.08997 * 109.47102 * 180.02562 * 5 4 2 29 29 H 1.09004 * 109.46714 * 265.95380 * 9 8 6 30 30 H 1.08996 * 109.47507 * 25.95066 * 9 8 6 31 31 H 1.09004 * 109.47117 * 145.95761 * 9 8 6 32 32 H 0.97001 * 120.00570 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47443 * 180.02562 * 18 6 5 34 34 H 1.09011 * 109.46576 * 299.99884 * 18 6 5 35 35 H 1.08999 * 109.47394 * 299.99663 * 21 19 2 36 36 H 1.08993 * 109.47261 * 60.00369 * 21 19 2 37 37 H 1.09008 * 109.46632 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4417 -0.0008 8 7 3.5925 -2.8230 -0.0001 9 6 3.2188 -3.4680 -1.2613 10 6 3.4913 -3.5132 1.1782 11 1 2.6716 -4.1990 1.3336 12 6 4.4421 -3.3313 2.1730 13 7 4.1949 -3.7342 3.4013 14 14 6.0728 -2.5147 1.7684 15 1 5.9915 -1.0653 2.0809 16 1 7.1517 -3.1359 2.5779 17 1 6.3714 -2.6939 0.3248 18 6 3.5704 -0.7205 1.2489 19 6 2.0399 -0.7213 1.2492 20 1 1.6766 -1.7490 1.2492 21 6 1.5299 -0.0001 2.4984 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2494 26 1 1.6766 -0.2073 -2.1392 27 1 3.9329 0.3071 -1.2497 28 1 3.9333 -1.2341 -2.1398 29 1 2.1480 -3.3491 -1.4268 30 1 3.7669 -3.0058 -2.0823 31 1 3.4633 -4.5292 -1.2131 32 1 4.8592 -3.6069 4.0966 33 1 3.9345 -1.2339 2.1389 34 1 3.9335 0.3074 1.2487 35 1 1.8933 1.0275 2.4985 36 1 0.4400 -0.0001 2.4984 37 1 1.8936 -0.5138 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251874977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:41 Heat of formation + Delta-G solvation = 12.450118 kcal Electronic energy + Delta-G solvation = -15797.260443 eV Core-core repulsion = 13574.913306 eV Total energy + Delta-G solvation = -2222.347137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10723 -34.98071 -32.33540 -31.07269 -30.49542 -27.35141 -25.40731 -24.86708 -22.28241 -21.07877 -19.81936 -18.70807 -16.55852 -15.40421 -14.37153 -14.07660 -14.00529 -13.71955 -13.36369 -13.15088 -12.52365 -12.12699 -11.70566 -11.62055 -11.42812 -11.30713 -11.23162 -10.94577 -10.70427 -10.67784 -10.22238 -10.04985 -9.90623 -9.61097 -9.43146 -9.13475 -9.02926 -8.38515 -6.62482 -5.90488 -3.33020 3.39227 3.51969 3.55397 4.57511 5.06157 5.29106 5.35638 5.43234 5.46283 5.76024 5.82837 5.96693 6.05299 6.06359 6.17291 6.22144 6.29418 6.32517 6.39985 6.44362 6.50016 6.50828 6.58624 6.64622 6.69998 6.75277 6.82581 7.00493 7.05838 7.16871 7.39222 7.50475 8.15327 8.45204 9.09432 9.81185 10.24092 11.25323 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.015248 C = 0.013080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.698552 B = 1835.900760 C = 2140.101162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.054 0.946 4 C -0.111 4.111 5 C -0.124 4.124 6 C 0.159 3.841 7 H 0.023 0.977 8 N -0.606 5.606 9 C 0.123 3.877 10 C -0.256 4.256 11 H 0.078 0.922 12 C 0.037 3.963 13 N -0.909 5.909 14 Si 0.882 3.118 15 H -0.282 1.282 16 H -0.308 1.308 17 H -0.272 1.272 18 C -0.119 4.119 19 C -0.070 4.070 20 H 0.093 0.907 21 C -0.144 4.144 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 7.558 -7.082 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.163 4.163 6 C 0.053 3.947 7 H 0.040 0.960 8 N -0.332 5.332 9 C -0.022 4.022 10 C -0.385 4.385 11 H 0.095 0.905 12 C -0.162 4.162 13 N -0.552 5.552 14 Si 0.713 3.287 15 H -0.209 1.209 16 H -0.236 1.236 17 H -0.198 1.198 18 C -0.158 4.158 19 C -0.088 4.088 20 H 0.111 0.889 21 C -0.202 4.202 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.939 7.536 -6.926 10.967 hybrid contribution 1.105 0.507 -0.085 1.219 sum -2.834 8.043 -7.011 11.040 Atomic orbital electron populations 1.21857 0.96296 1.01512 1.00486 1.21137 0.94508 0.98588 0.95989 0.92748 1.21660 0.95236 1.01809 0.96156 1.21870 0.96377 0.99423 0.98584 1.20672 0.95369 0.85103 0.93527 0.96033 1.44079 1.78135 1.07697 1.03321 1.21164 0.96607 0.96433 0.88038 1.18666 1.06751 1.22200 0.90897 0.90468 1.25407 0.97267 0.97791 0.95729 1.69809 1.35011 1.49894 1.00462 0.87189 0.85220 0.78757 0.77582 1.20879 1.23611 1.19758 1.21913 0.95821 0.97646 1.00373 1.20936 0.95230 1.00701 0.91950 0.88856 1.21862 0.99870 0.99334 0.99096 0.92889 0.93834 0.92799 0.90288 0.93810 0.92834 0.92434 0.97094 0.95222 0.94368 0.92908 0.89554 0.94352 0.94218 0.93449 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.84 37.16 0.33 -1.75 16 2 C -0.08 -1.38 2.25 -90.62 -0.20 -1.59 16 3 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -1.84 4.91 -26.73 -0.13 -1.97 16 5 C -0.12 -2.22 4.95 -26.73 -0.13 -2.35 16 6 C 0.16 3.48 2.27 -67.93 -0.15 3.33 16 7 H 0.02 0.53 4.23 -51.93 -0.22 0.31 16 8 N -0.61 -14.30 2.09 -173.48 -0.36 -14.67 16 9 C 0.12 2.47 9.10 59.85 0.54 3.01 16 10 C -0.26 -7.03 8.07 -15.06 -0.12 -7.15 16 11 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 12 C 0.04 1.06 3.98 -17.43 -0.07 0.99 16 13 N -0.91 -27.42 13.97 55.49 0.78 -26.64 16 14 Si 0.88 22.77 23.17 -169.99 -3.94 18.83 16 15 H -0.28 -7.03 6.48 56.52 0.37 -6.66 16 16 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 17 H -0.27 -6.98 6.44 56.52 0.36 -6.62 16 18 C -0.12 -2.62 3.23 -26.70 -0.09 -2.70 16 19 C -0.07 -1.37 2.02 -90.60 -0.18 -1.56 16 20 H 0.09 2.14 6.62 -51.93 -0.34 1.80 16 21 C -0.14 -2.58 8.84 37.16 0.33 -2.25 16 22 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 23 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 1.42 5.00 -51.93 -0.26 1.16 16 26 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.97 6.38 -51.93 -0.33 0.64 16 29 H 0.01 0.21 6.25 -51.93 -0.32 -0.11 16 30 H 0.03 0.54 6.19 -51.93 -0.32 0.21 16 31 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 2.19 4.14 -51.93 -0.22 1.97 16 34 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 37 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 258.98 15.07 3.90 3.90 Total: -1.00 -28.86 258.98 -5.62 -34.48 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.12 Total: -1.91 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 0.12 Total: -14.00 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.41 Total: -41.31 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -3.94 Total: 18.83 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.86 -5.62 -34.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251874977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.930 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds