Wall clock time and date at job start Sun Mar 29 2020 21:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47167 * 240.00117 * 2 1 3 5 5 C 1.52999 * 109.47167 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.46914 * 60.00309 * 5 4 2 7 7 H 1.09000 * 109.47653 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47275 * 59.99567 * 6 5 4 9 9 C 1.46500 * 119.99685 * 23.78667 * 8 6 5 10 10 C 1.36938 * 120.00089 * 203.50336 * 8 6 5 11 11 H 1.07997 * 119.99723 * 143.33187 * 10 8 6 12 12 C 1.38807 * 120.00179 * 323.32929 * 10 8 6 13 13 N 1.31615 * 120.00271 * 164.09512 * 12 10 8 14 14 Si 1.86806 * 120.00189 * 344.09720 * 12 10 8 15 15 H 1.48496 * 109.46967 * 95.23281 * 14 12 10 16 16 H 1.48498 * 109.47050 * 215.23760 * 14 12 10 17 17 H 1.48505 * 109.46800 * 335.23580 * 14 12 10 18 18 C 1.53003 * 109.47356 * 300.00177 * 6 5 4 19 19 C 1.52994 * 109.46914 * 120.00426 * 2 1 3 20 20 H 1.08998 * 109.47536 * 59.99781 * 19 2 1 21 21 C 1.53001 * 109.46951 * 299.99824 * 19 2 1 22 22 H 1.09003 * 109.47030 * 300.00196 * 1 2 3 23 23 H 1.09008 * 109.47201 * 59.99360 * 1 2 3 24 24 H 1.08999 * 109.47509 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47394 * 300.00669 * 4 2 1 26 26 H 1.09008 * 109.46632 * 60.00175 * 4 2 1 27 27 H 1.08996 * 109.47050 * 300.00398 * 5 4 2 28 28 H 1.08997 * 109.47102 * 180.02562 * 5 4 2 29 29 H 1.09004 * 109.46714 * 265.95380 * 9 8 6 30 30 H 1.08996 * 109.47507 * 25.95066 * 9 8 6 31 31 H 1.09004 * 109.47117 * 145.95761 * 9 8 6 32 32 H 0.97001 * 120.00570 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47443 * 180.02562 * 18 6 5 34 34 H 1.09011 * 109.46576 * 299.99884 * 18 6 5 35 35 H 1.08999 * 109.47394 * 299.99663 * 21 19 2 36 36 H 1.08993 * 109.47261 * 60.00369 * 21 19 2 37 37 H 1.09008 * 109.46632 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4417 -0.0008 8 7 3.5925 -2.8230 -0.0001 9 6 3.2188 -3.4680 -1.2613 10 6 3.4913 -3.5132 1.1782 11 1 2.6716 -4.1990 1.3336 12 6 4.4421 -3.3313 2.1730 13 7 4.1949 -3.7342 3.4013 14 14 6.0728 -2.5147 1.7684 15 1 5.9915 -1.0653 2.0809 16 1 7.1517 -3.1359 2.5779 17 1 6.3714 -2.6939 0.3248 18 6 3.5704 -0.7205 1.2489 19 6 2.0399 -0.7213 1.2492 20 1 1.6766 -1.7490 1.2492 21 6 1.5299 -0.0001 2.4984 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2494 26 1 1.6766 -0.2073 -2.1392 27 1 3.9329 0.3071 -1.2497 28 1 3.9333 -1.2341 -2.1398 29 1 2.1480 -3.3491 -1.4268 30 1 3.7669 -3.0058 -2.0823 31 1 3.4633 -4.5292 -1.2131 32 1 4.8592 -3.6069 4.0966 33 1 3.9345 -1.2339 2.1389 34 1 3.9335 0.3074 1.2487 35 1 1.8933 1.0275 2.4985 36 1 0.4400 -0.0001 2.4984 37 1 1.8936 -0.5138 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251874977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:40 Heat of formation + Delta-G solvation = -5.026214 kcal Electronic energy + Delta-G solvation = -15798.018274 eV Core-core repulsion = 13574.913306 eV Total energy + Delta-G solvation = -2223.104968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67980 -36.65459 -34.19846 -32.72252 -32.15243 -28.91530 -27.13776 -26.37132 -24.07673 -22.54641 -21.44811 -20.31708 -18.51228 -17.28411 -16.06694 -15.86033 -15.46644 -15.23837 -15.04613 -14.74543 -14.16246 -13.86890 -13.35440 -13.22047 -13.02680 -12.79858 -12.71421 -12.50961 -12.27596 -12.18022 -11.99643 -11.74020 -11.57799 -11.41203 -11.03533 -10.77959 -10.65793 -10.37414 -8.59226 -8.12790 -5.50637 1.31571 1.38982 1.47219 2.43392 3.14828 3.42720 3.94045 3.99375 4.01132 4.34692 4.38182 4.58007 4.60133 4.69138 4.72443 4.77550 4.84206 4.90979 4.95019 5.05762 5.07713 5.08462 5.10221 5.20292 5.27283 5.28955 5.37042 5.49770 5.58264 5.69754 5.76529 5.90320 6.02340 6.22486 7.07953 7.73823 8.15711 9.07417 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.015248 C = 0.013080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.698552 B = 1835.900760 C = 2140.101162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.118 4.118 6 C 0.150 3.850 7 H 0.006 0.994 8 N -0.615 5.615 9 C 0.121 3.879 10 C -0.237 4.237 11 H 0.039 0.961 12 C -0.007 4.007 13 N -0.955 5.955 14 Si 0.936 3.064 15 H -0.270 1.270 16 H -0.319 1.319 17 H -0.266 1.266 18 C -0.123 4.123 19 C -0.066 4.066 20 H 0.050 0.950 21 C -0.140 4.140 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.258 0.742 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 9.934 -9.510 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.146 4.146 5 C -0.156 4.156 6 C 0.045 3.955 7 H 0.023 0.977 8 N -0.341 5.341 9 C -0.023 4.023 10 C -0.367 4.367 11 H 0.056 0.944 12 C -0.203 4.203 13 N -0.600 5.600 14 Si 0.767 3.233 15 H -0.196 1.196 16 H -0.248 1.248 17 H -0.191 1.191 18 C -0.161 4.161 19 C -0.085 4.085 20 H 0.069 0.931 21 C -0.197 4.197 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.305 9.925 -9.400 14.332 hybrid contribution 1.134 -0.261 0.652 1.333 sum -3.171 9.665 -8.748 13.416 Atomic orbital electron populations 1.21811 0.94601 1.01186 1.02107 1.21106 0.95923 0.98755 0.93992 0.91047 1.21643 0.94261 1.01236 0.97435 1.21828 0.97218 1.00122 0.96425 1.20805 0.94456 0.84408 0.95865 0.97687 1.44197 1.78035 1.08778 1.03126 1.21274 0.97820 0.95954 0.87255 1.18456 1.04901 1.20990 0.92353 0.94362 1.25843 0.99923 0.99066 0.95431 1.69931 1.35923 1.52699 1.01495 0.86302 0.81353 0.78500 0.77174 1.19619 1.24835 1.19139 1.21905 0.97461 0.98055 0.98695 1.20828 0.93769 0.99117 0.94758 0.93116 1.21812 1.01056 0.99806 0.97004 0.92206 0.91319 0.94123 0.92088 0.90507 0.90587 0.91142 0.95648 0.92353 0.95290 0.93249 0.93679 0.92505 0.92102 0.91559 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.84 71.98 0.64 -2.90 16 2 C -0.08 -2.34 2.25 -10.80 -0.02 -2.37 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -3.14 4.91 30.59 0.15 -2.99 16 5 C -0.12 -3.72 4.95 30.59 0.15 -3.56 16 6 C 0.15 6.27 2.27 44.99 0.10 6.38 16 7 H 0.01 0.27 4.23 -2.39 -0.01 0.26 16 8 N -0.62 -28.71 2.09 -702.78 -1.47 -30.18 16 9 C 0.12 4.68 9.10 127.77 1.16 5.84 16 10 C -0.24 -13.39 8.07 84.03 0.68 -12.72 16 11 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 12 C -0.01 -0.43 3.98 84.86 0.34 -0.09 16 13 N -0.95 -60.14 13.97 21.65 0.30 -59.84 16 14 Si 0.94 47.92 23.17 68.60 1.59 49.51 16 15 H -0.27 -13.13 6.48 99.48 0.64 -12.48 16 16 H -0.32 -16.73 7.11 99.48 0.71 -16.03 16 17 H -0.27 -13.19 6.44 99.48 0.64 -12.55 16 18 C -0.12 -5.26 3.23 30.61 0.10 -5.16 16 19 C -0.07 -2.53 2.02 -10.78 -0.02 -2.56 16 20 H 0.05 2.37 6.62 -2.39 -0.02 2.35 16 21 C -0.14 -4.85 8.84 71.98 0.64 -4.21 16 22 H 0.06 1.42 6.43 -2.39 -0.02 1.41 16 23 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 2.00 5.00 -2.39 -0.01 1.99 16 26 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.05 6.38 -2.39 -0.02 2.03 16 29 H 0.03 0.93 6.25 -2.38 -0.01 0.91 16 30 H 0.06 1.93 6.19 -2.39 -0.01 1.91 16 31 H 0.03 1.15 8.07 -2.38 -0.02 1.13 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.04 2.30 4.14 -2.38 -0.01 2.29 16 34 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.01 6.43 -2.39 -0.02 2.00 16 37 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -64.41 258.98 5.23 -59.18 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.90 Total: 5.68 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 3.91 Total: -24.34 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.17 Total: -90.02 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.59 Total: 49.51 kcal Total: -64.41 5.23 -59.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251874977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.150 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds