Wall clock time and date at job start Sun Mar 29 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 5 5 C 1.53002 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 4 2 7 7 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 8 8 N 1.46901 * 109.47195 * 179.97438 * 6 5 4 9 9 C 1.46906 * 110.99932 * 274.99831 * 8 6 5 10 10 C 1.50699 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99610 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46848 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46706 * 119.99765 * 14 12 10 17 17 H 1.48493 * 109.47394 * 239.99819 * 14 12 10 18 18 C 1.53000 * 109.47328 * 299.99597 * 6 5 4 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 6 5 20 20 H 1.08998 * 109.47533 * 59.99948 * 19 18 6 21 21 C 1.52992 * 109.47482 * 180.02562 * 19 18 6 22 22 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 25 25 H 1.09002 * 109.47045 * 59.99942 * 4 2 1 26 26 H 1.09001 * 109.47375 * 299.99867 * 4 2 1 27 27 H 1.08992 * 109.47056 * 300.00064 * 5 4 2 28 28 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 29 29 H 1.00895 * 111.00156 * 151.04618 * 8 6 5 30 30 H 1.08996 * 109.46904 * 300.00110 * 9 8 6 31 31 H 1.09005 * 109.46776 * 59.99921 * 9 8 6 32 32 H 0.96997 * 119.99545 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47398 * 180.02562 * 18 6 5 34 34 H 1.09001 * 109.47194 * 300.00476 * 18 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 21 19 18 36 36 H 1.08996 * 109.47747 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.47103 * 300.00247 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 1 3.7175 -2.4694 0.0000 8 7 5.5494 -1.4416 -0.0007 9 6 6.0756 -2.5653 -0.7872 10 6 7.5821 -2.5320 -0.7652 11 1 8.0971 -1.7537 -0.2217 12 6 8.3029 -3.4945 -1.4398 13 7 7.6756 -4.4420 -2.1020 14 14 10.1702 -3.4529 -1.4131 15 1 10.6279 -2.2955 -0.6030 16 1 10.6848 -4.7104 -0.8138 17 1 10.6823 -3.3200 -2.8006 18 6 3.5705 -0.7204 1.2490 19 6 2.0405 -0.7209 1.2493 20 1 1.6774 -1.7486 1.2495 21 6 1.5304 0.0009 2.4982 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2075 -2.1392 26 1 1.6767 -1.7490 -1.2492 27 1 3.9329 0.3070 -1.2497 28 1 3.9334 -1.2342 -2.1397 29 1 5.9114 -1.4585 0.9409 30 1 5.7262 -3.5043 -0.3580 31 1 5.7257 -2.4837 -1.8164 32 1 8.1827 -5.1193 -2.5763 33 1 3.9345 -1.2337 2.1390 34 1 3.9334 0.3075 1.2488 35 1 1.8934 1.0287 2.4975 36 1 0.4405 0.0009 2.4982 37 1 1.8941 -0.5123 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251993665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:42 Heat of formation + Delta-G solvation = -39.329191 kcal Electronic energy + Delta-G solvation = -14388.009217 eV Core-core repulsion = 12163.416760 eV Total energy + Delta-G solvation = -2224.592456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05106 -35.16935 -32.67077 -31.97317 -30.42298 -27.30464 -25.96215 -24.38293 -21.90854 -21.50323 -19.72856 -19.47025 -16.40913 -14.83561 -14.70836 -14.56845 -14.38730 -14.23332 -13.71831 -13.06163 -12.71116 -12.22138 -12.07746 -11.98709 -11.75094 -11.51912 -11.41808 -10.92512 -10.87985 -10.72695 -10.61594 -10.47484 -10.26831 -10.04309 -9.77154 -9.47620 -9.07004 -8.45184 -7.21568 -6.00178 -4.01739 3.32753 3.39788 3.45218 4.45392 4.76794 4.85657 4.90646 5.21770 5.33302 5.35762 5.52147 5.57038 5.60248 5.72825 5.75145 5.77879 5.89343 5.95023 6.01995 6.05644 6.11737 6.20032 6.24784 6.42517 6.48356 6.55721 6.64552 6.77227 6.88949 7.34662 7.48169 7.84116 8.18817 8.48200 8.69047 9.08585 9.63147 11.11066 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062331 B = 0.005947 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.109463 B = 4707.372064 C = 4950.836035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.105 4.105 6 C 0.087 3.913 7 H 0.032 0.968 8 N -0.688 5.688 9 C 0.194 3.806 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.113 4.113 19 C -0.084 4.084 20 H 0.066 0.934 21 C -0.147 4.147 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.327 0.673 30 H -0.016 1.016 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 7.679 5.602 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.023 4.023 7 H 0.049 0.951 8 N -0.318 5.318 9 C 0.068 3.932 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.151 4.151 19 C -0.103 4.103 20 H 0.085 0.915 21 C -0.204 4.204 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.002 0.998 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.846 7.965 4.965 15.910 hybrid contribution 0.860 -0.936 0.456 1.350 sum -11.986 7.030 5.421 14.916 Atomic orbital electron populations 1.21899 0.95879 1.01545 1.01225 1.21158 0.94753 0.99628 0.94864 0.91357 1.21609 0.96521 1.00191 0.96835 1.21489 0.93235 1.01108 0.98443 1.21431 0.90126 0.96786 0.93971 0.95055 1.60679 1.03959 1.49340 1.17871 1.19583 0.94778 0.85636 0.93236 1.21258 0.91246 1.11105 1.31489 0.91961 1.24999 0.98827 0.95387 0.95438 1.69980 1.35427 1.14986 1.33456 0.86439 0.85388 0.77814 0.77756 1.19661 1.21128 1.21009 1.21765 0.94316 1.01370 0.97630 1.21123 0.95560 0.99404 0.94247 0.91544 1.21882 1.00650 1.00445 0.97462 0.92928 0.92707 0.93047 0.92382 0.92389 0.91874 0.91911 0.85573 0.99805 0.95420 0.93024 0.92542 0.91508 0.92842 0.92718 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.84 37.16 0.33 -1.16 16 2 C -0.09 -1.02 2.25 -90.62 -0.20 -1.23 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.55 5.20 -26.73 -0.14 -1.69 16 5 C -0.10 -1.79 5.43 -26.73 -0.15 -1.93 16 6 C 0.09 1.60 2.49 -67.71 -0.17 1.43 16 7 H 0.03 0.62 7.80 -51.93 -0.40 0.22 16 8 N -0.69 -15.22 6.30 -107.99 -0.68 -15.90 16 9 C 0.19 5.24 5.24 -4.97 -0.03 5.22 16 10 C -0.51 -14.86 9.32 -34.44 -0.32 -15.18 16 11 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 14 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.11 -1.67 4.48 -26.73 -0.12 -1.79 16 19 C -0.08 -1.05 2.25 -90.62 -0.20 -1.25 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.15 -1.53 8.84 37.15 0.33 -1.21 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.50 6.43 -51.93 -0.33 0.16 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 29 H 0.33 6.94 8.34 -39.29 -0.33 6.61 16 30 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 31 H 0.03 0.80 7.44 -51.93 -0.39 0.42 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.51 6.43 -51.93 -0.33 0.17 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 287.83 15.07 4.34 4.34 Total: -1.00 -29.88 287.83 -8.18 -38.06 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.79 Total: 0.42 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.77 Total: -17.29 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.06 Total: -42.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.88 -8.18 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251993665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.272 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds