Wall clock time and date at job start Sun Mar 29 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 5 5 C 1.53002 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 4 2 7 7 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 8 8 N 1.46901 * 109.47195 * 179.97438 * 6 5 4 9 9 C 1.46906 * 110.99932 * 274.99831 * 8 6 5 10 10 C 1.50699 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99610 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46848 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46706 * 119.99765 * 14 12 10 17 17 H 1.48493 * 109.47394 * 239.99819 * 14 12 10 18 18 C 1.53000 * 109.47328 * 299.99597 * 6 5 4 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 6 5 20 20 H 1.08998 * 109.47533 * 59.99948 * 19 18 6 21 21 C 1.52992 * 109.47482 * 180.02562 * 19 18 6 22 22 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 25 25 H 1.09002 * 109.47045 * 59.99942 * 4 2 1 26 26 H 1.09001 * 109.47375 * 299.99867 * 4 2 1 27 27 H 1.08992 * 109.47056 * 300.00064 * 5 4 2 28 28 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 29 29 H 1.00895 * 111.00156 * 151.04618 * 8 6 5 30 30 H 1.08996 * 109.46904 * 300.00110 * 9 8 6 31 31 H 1.09005 * 109.46776 * 59.99921 * 9 8 6 32 32 H 0.96997 * 119.99545 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47398 * 180.02562 * 18 6 5 34 34 H 1.09001 * 109.47194 * 300.00476 * 18 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 21 19 18 36 36 H 1.08996 * 109.47747 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.47103 * 300.00247 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 1 3.7175 -2.4694 0.0000 8 7 5.5494 -1.4416 -0.0007 9 6 6.0756 -2.5653 -0.7872 10 6 7.5821 -2.5320 -0.7652 11 1 8.0971 -1.7537 -0.2217 12 6 8.3029 -3.4945 -1.4398 13 7 7.6756 -4.4420 -2.1020 14 14 10.1702 -3.4529 -1.4131 15 1 10.6279 -2.2955 -0.6030 16 1 10.6848 -4.7104 -0.8138 17 1 10.6823 -3.3200 -2.8006 18 6 3.5705 -0.7204 1.2490 19 6 2.0405 -0.7209 1.2493 20 1 1.6774 -1.7486 1.2495 21 6 1.5304 0.0009 2.4982 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2075 -2.1392 26 1 1.6767 -1.7490 -1.2492 27 1 3.9329 0.3070 -1.2497 28 1 3.9334 -1.2342 -2.1397 29 1 5.9114 -1.4585 0.9409 30 1 5.7262 -3.5043 -0.3580 31 1 5.7257 -2.4837 -1.8164 32 1 8.1827 -5.1193 -2.5763 33 1 3.9345 -1.2337 2.1390 34 1 3.9334 0.3075 1.2488 35 1 1.8934 1.0287 2.4975 36 1 0.4405 0.0009 2.4982 37 1 1.8941 -0.5123 3.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251993665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:42 Heat of formation + Delta-G solvation = -57.848410 kcal Electronic energy + Delta-G solvation = -14388.812270 eV Core-core repulsion = 12163.416760 eV Total energy + Delta-G solvation = -2225.395510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27454 -36.83397 -34.70797 -33.09820 -31.96985 -28.81686 -27.45583 -25.70492 -23.78912 -22.76955 -21.18023 -20.57413 -18.59140 -16.74779 -16.30514 -15.93757 -15.62866 -15.42276 -14.99614 -14.44991 -14.43094 -13.68577 -13.57408 -13.39820 -12.92911 -12.72939 -12.65122 -12.62002 -12.51877 -12.21776 -11.99992 -11.82541 -11.77250 -11.39504 -11.28779 -10.89843 -10.77918 -10.68193 -9.12844 -8.24485 -6.36316 1.39746 1.40838 1.55066 2.38814 3.08557 3.44782 3.77658 3.78992 4.07539 4.16994 4.28842 4.48615 4.50559 4.58054 4.66599 4.76908 4.77542 4.94826 4.98059 4.99480 5.08159 5.13721 5.15718 5.20361 5.22077 5.29786 5.36279 5.37904 5.47242 5.59560 5.61625 5.68156 6.02372 6.46542 6.73291 6.89242 7.35147 8.87659 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062331 B = 0.005947 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.109463 B = 4707.372064 C = 4950.836035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.101 4.101 6 C 0.084 3.916 7 H 0.011 0.989 8 N -0.686 5.686 9 C 0.212 3.788 10 C -0.536 4.536 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.936 5.936 14 Si 0.977 3.023 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.104 4.104 19 C -0.082 4.082 20 H 0.060 0.940 21 C -0.142 4.142 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.333 0.667 30 H -0.046 1.046 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 9.003 6.612 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.026 4.026 7 H 0.029 0.971 8 N -0.317 5.317 9 C 0.084 3.916 10 C -0.574 4.574 11 H 0.083 0.917 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.800 3.200 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.142 4.142 19 C -0.101 4.101 20 H 0.078 0.922 21 C -0.199 4.199 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.151 0.849 30 H -0.028 1.028 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.227 9.305 5.989 17.245 hybrid contribution 0.939 -1.362 0.118 1.658 sum -12.288 7.943 6.108 15.855 Atomic orbital electron populations 1.21856 0.93826 1.01932 1.02463 1.21139 0.96396 0.99258 0.93261 0.90921 1.21577 0.93551 1.00565 0.98882 1.21450 0.96015 1.00236 0.96267 1.21582 0.87710 0.96505 0.96825 0.97139 1.60600 1.06550 1.46754 1.17780 1.19195 0.94445 0.85888 0.92084 1.21600 0.92203 1.11589 1.32055 0.91695 1.26011 1.04606 0.94657 0.94585 1.70113 1.37802 1.15706 1.34015 0.85229 0.78267 0.78346 0.78108 1.18555 1.20169 1.20291 1.21698 0.96333 1.00806 0.95338 1.21113 0.93426 0.99663 0.95897 0.92176 1.21835 1.01670 1.00346 0.96046 0.92981 0.91149 0.92201 0.90892 0.92921 0.91784 0.95228 0.84927 1.02794 0.98452 0.92586 0.92354 0.91055 0.92249 0.91049 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.84 71.98 0.64 -1.80 16 2 C -0.08 -1.79 2.25 -10.79 -0.02 -1.81 16 3 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -2.87 5.20 30.59 0.16 -2.71 16 5 C -0.10 -3.55 5.43 30.59 0.17 -3.39 16 6 C 0.08 3.15 2.49 44.91 0.11 3.26 16 7 H 0.01 0.44 7.80 -2.39 -0.02 0.42 16 8 N -0.69 -31.31 6.30 -495.56 -3.12 -34.44 16 9 C 0.21 11.98 5.24 85.56 0.45 12.43 16 10 C -0.54 -31.75 9.32 25.60 0.24 -31.51 16 11 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 13 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 14 Si 0.98 45.25 29.54 68.60 2.03 47.27 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 C -0.10 -2.98 4.48 30.59 0.14 -2.85 16 19 C -0.08 -1.89 2.25 -10.79 -0.02 -1.91 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.14 -2.53 8.84 71.98 0.64 -1.89 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.00 6.43 -2.38 -0.02 0.98 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.03 1.20 7.45 -2.38 -0.02 1.18 16 29 H 0.33 14.37 8.34 -89.70 -0.75 13.62 16 30 H -0.05 -2.78 8.05 -2.39 -0.02 -2.80 16 31 H 0.00 -0.16 7.44 -2.38 -0.02 -0.18 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 33 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -65.35 287.83 2.40 -62.96 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.26 Total: 13.90 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 2.95 Total: -31.76 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -2.84 Total: -92.36 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.35 2.40 -62.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251993665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.107 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds