Wall clock time and date at job start Sun Mar 29 2020 21:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46935 * 2 1 4 4 C 1.53002 * 109.47197 * 240.00099 * 2 1 3 5 5 C 1.53000 * 109.46806 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46911 * 59.99917 * 5 4 2 7 7 H 1.09004 * 109.46930 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47248 * 59.99883 * 6 5 4 9 9 C 1.46903 * 110.99935 * 84.99822 * 8 6 5 10 10 C 1.50693 * 109.46968 * 180.02562 * 9 8 6 11 11 H 1.08008 * 120.00370 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00268 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99454 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00336 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47532 * 89.99635 * 14 12 10 16 16 H 1.48499 * 109.47342 * 209.99798 * 14 12 10 17 17 H 1.48499 * 109.47013 * 329.99847 * 14 12 10 18 18 C 1.52997 * 109.47143 * 299.99808 * 6 5 4 19 19 C 1.52992 * 109.47482 * 60.00181 * 18 6 5 20 20 H 1.09002 * 109.47103 * 59.99753 * 19 18 6 21 21 C 1.52997 * 109.47482 * 179.97438 * 19 18 6 22 22 H 1.08992 * 109.47061 * 299.99975 * 1 2 3 23 23 H 1.09001 * 109.46812 * 60.00342 * 1 2 3 24 24 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 26 26 H 1.09002 * 109.46838 * 299.99316 * 4 2 1 27 27 H 1.08992 * 109.47399 * 299.99952 * 5 4 2 28 28 H 1.09004 * 109.46724 * 179.97438 * 5 4 2 29 29 H 1.00895 * 110.99606 * 321.04724 * 8 6 5 30 30 H 1.08996 * 109.46951 * 299.99774 * 9 8 6 31 31 H 1.08998 * 109.47373 * 60.00158 * 9 8 6 32 32 H 0.97003 * 119.99695 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47153 * 299.99965 * 18 6 5 34 34 H 1.09001 * 109.46832 * 180.02562 * 18 6 5 35 35 H 1.09002 * 109.47153 * 59.99783 * 21 19 18 36 36 H 1.09001 * 109.46832 * 299.99974 * 21 19 18 37 37 H 1.09004 * 109.47261 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 1 5.1706 -1.4415 -0.0006 8 7 3.5913 -2.8267 0.0001 9 6 4.4753 -3.6973 -0.7865 10 6 3.9422 -5.1067 -0.7637 11 1 3.0371 -5.3330 -0.2196 12 6 4.6100 -6.1073 -1.4373 13 7 5.7118 -5.8316 -2.1003 14 14 3.9489 -7.8542 -1.4096 15 1 3.0175 -8.0492 -2.5497 16 1 5.0776 -8.8125 -1.5231 17 1 3.2260 -8.0896 -0.1340 18 6 3.5704 -0.7203 1.2490 19 6 2.0405 -0.7208 1.2493 20 1 1.6775 -1.7486 1.2495 21 6 1.5304 -0.0001 2.4988 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -0.2074 -2.1393 26 1 1.6768 -1.7489 -1.2492 27 1 3.9330 0.3071 -1.2497 28 1 3.9334 -1.2349 -2.1393 29 1 2.6420 -2.8749 -0.3380 30 1 4.5143 -3.3407 -1.8158 31 1 5.4773 -3.6805 -0.3579 32 1 6.1815 -6.5355 -2.5746 33 1 3.9334 0.3075 1.2488 34 1 3.9345 -1.2336 2.1390 35 1 1.8934 1.0277 2.4991 36 1 1.8941 -0.5141 3.3886 37 1 0.4404 -0.0001 2.4988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251993668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:44 Heat of formation + Delta-G solvation = -53.058061 kcal Electronic energy + Delta-G solvation = -14698.292623 eV Core-core repulsion = 12473.104839 eV Total energy + Delta-G solvation = -2225.187785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52875 -36.51697 -34.66618 -32.93138 -31.94072 -28.53512 -27.56888 -26.07939 -23.87060 -22.68665 -21.56608 -19.82460 -18.56914 -16.92942 -16.37931 -15.67825 -15.55866 -15.30127 -15.02765 -14.65678 -14.21259 -13.73389 -13.55548 -13.20816 -12.78013 -12.75993 -12.70128 -12.61038 -12.47872 -12.30284 -12.17182 -11.88830 -11.73176 -11.34657 -11.09000 -10.86268 -10.72967 -10.64772 -8.99491 -8.23290 -6.34721 1.39161 1.41231 1.53117 2.39017 3.09565 3.64186 3.82445 3.85457 3.93452 4.25395 4.28809 4.48749 4.54024 4.61129 4.71999 4.75243 4.87462 4.92411 5.00690 5.02452 5.05958 5.17383 5.20214 5.22262 5.25300 5.29155 5.36009 5.46560 5.56324 5.62210 5.64985 5.74903 6.04221 6.51268 6.77116 6.93604 7.36555 8.88331 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041411 B = 0.007150 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.994095 B = 3915.406047 C = 4008.878541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.142 4.142 6 C 0.078 3.922 7 H 0.047 0.953 8 N -0.680 5.680 9 C 0.211 3.789 10 C -0.536 4.536 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.090 4.090 19 C -0.085 4.085 20 H 0.055 0.945 21 C -0.141 4.141 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.334 0.666 30 H -0.041 1.041 31 H -0.007 1.007 32 H 0.265 0.735 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.318 12.886 4.925 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.181 4.181 6 C -0.033 4.033 7 H 0.065 0.935 8 N -0.312 5.312 9 C 0.083 3.917 10 C -0.574 4.574 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.128 4.128 19 C -0.103 4.103 20 H 0.074 0.926 21 C -0.198 4.198 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.154 0.846 30 H -0.023 1.023 31 H 0.011 0.989 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.885 12.647 5.432 16.383 hybrid contribution 0.191 -0.909 -1.300 1.598 sum -8.694 11.738 4.132 15.180 Atomic orbital electron populations 1.21868 0.94383 1.01656 1.02364 1.21105 0.96063 0.99244 0.93186 0.90325 1.21561 0.94226 1.00163 0.98986 1.22094 0.97260 1.01109 0.97675 1.21639 0.97760 0.88484 0.95408 0.93485 1.60731 1.05757 1.06777 1.57975 1.19168 0.91880 0.91612 0.89041 1.21568 1.10480 0.94165 1.31227 0.91961 1.25971 0.95084 1.04058 0.94640 1.70101 1.18567 1.34856 1.33988 0.85329 0.77946 0.78096 0.78916 1.19600 1.20591 1.18879 1.21502 0.96061 0.99228 0.96042 1.21075 0.94494 0.99384 0.95369 0.92636 1.21826 1.01356 1.00308 0.96293 0.91113 0.92218 0.93570 0.91068 0.93690 0.90139 0.94932 0.84642 1.02339 0.98862 0.92631 0.90613 0.92851 0.91886 0.93235 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.84 71.98 0.64 -2.20 16 2 C -0.08 -1.78 2.25 -10.79 -0.02 -1.80 16 3 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -3.12 4.95 30.60 0.15 -2.97 16 5 C -0.14 -4.60 5.52 30.60 0.17 -4.43 16 6 C 0.08 2.85 2.86 44.91 0.13 2.98 16 7 H 0.05 1.90 7.80 -2.38 -0.02 1.88 16 8 N -0.68 -30.51 5.75 -495.57 -2.85 -33.36 16 9 C 0.21 11.80 5.24 85.55 0.45 12.24 16 10 C -0.54 -31.67 9.32 25.60 0.24 -31.43 16 11 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 14 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.09 -2.63 4.92 30.59 0.15 -2.48 16 19 C -0.08 -2.17 2.01 -10.80 -0.02 -2.19 16 20 H 0.06 1.70 7.21 -2.39 -0.02 1.68 16 21 C -0.14 -2.84 8.84 71.98 0.64 -2.20 16 22 H 0.07 1.16 6.43 -2.39 -0.02 1.15 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.45 6.26 -2.39 -0.01 1.43 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.03 1.22 7.45 -2.39 -0.02 1.21 16 29 H 0.33 14.42 5.56 -89.70 -0.50 13.92 16 30 H -0.04 -2.46 7.43 -2.39 -0.02 -2.48 16 31 H -0.01 -0.41 8.05 -2.39 -0.02 -0.43 16 32 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.17 6.43 -2.38 -0.02 1.15 16 Total: -1.00 -64.45 282.12 2.95 -61.50 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.52 Total: 16.22 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 2.97 Total: -33.99 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.57 Total: -91.02 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.45 2.95 -61.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251993668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.438 kcal (2) G-P(sol) polarization free energy of solvation -64.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds