Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46883 * 2 1 4 4 C 1.52999 * 109.47257 * 239.99971 * 2 1 3 5 5 C 1.53003 * 109.47257 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47007 * 59.99839 * 5 4 2 7 7 C 1.52999 * 109.47243 * 300.00169 * 6 5 4 8 8 H 1.09001 * 109.47198 * 300.00148 * 7 6 5 9 9 C 1.52996 * 109.47243 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47007 * 119.99810 * 2 1 3 11 11 H 1.09001 * 109.47144 * 60.00350 * 10 2 1 12 12 N 1.46899 * 109.47374 * 300.00343 * 10 2 1 13 13 C 1.46902 * 110.99902 * 295.91155 * 12 10 2 14 14 C 1.50697 * 109.47165 * 175.18384 * 13 12 10 15 15 H 1.07993 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99749 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46825 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47031 * 120.00098 * 18 16 14 21 21 H 1.48495 * 109.46830 * 240.00107 * 18 16 14 22 22 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47140 * 300.00148 * 1 2 3 24 24 H 1.09004 * 109.46630 * 60.00120 * 1 2 3 25 25 H 1.09001 * 109.47198 * 299.99836 * 4 2 1 26 26 H 1.09005 * 109.46895 * 60.00155 * 4 2 1 27 27 H 1.08995 * 109.47456 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.46883 * 300.00029 * 5 4 2 29 29 H 1.09001 * 109.47171 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47144 * 60.00350 * 6 5 4 31 31 H 1.08998 * 109.47215 * 294.66381 * 9 7 6 32 32 H 1.08999 * 109.47442 * 54.66423 * 9 7 6 33 33 H 1.09003 * 109.47427 * 174.66689 * 9 7 6 34 34 H 1.00896 * 110.99890 * 171.96336 * 12 10 2 35 35 H 1.08998 * 109.47328 * 295.18866 * 13 12 10 36 36 H 1.09009 * 109.47046 * 55.18390 * 13 12 10 37 37 H 0.97001 * 120.00242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3076 1.2487 9 6 4.0816 -1.4407 2.4982 10 6 2.0400 -0.7212 1.2492 11 1 1.6767 -1.7489 1.2492 12 7 1.5503 -0.0288 2.4487 13 6 2.0994 1.3312 2.5325 14 6 1.4854 2.0494 3.7064 15 1 0.7601 1.5459 4.3283 16 6 1.8496 3.3494 3.9866 17 7 2.7325 3.9627 3.2290 18 14 1.0879 4.2399 5.4413 19 1 0.1299 3.3367 6.1281 20 1 2.1568 4.6414 6.3909 21 1 0.3720 5.4493 4.9617 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6768 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.9335 -1.2341 -2.1397 28 1 3.9330 0.3071 -1.2498 29 1 5.1706 -1.4407 -0.0003 30 1 3.7177 -2.4693 -0.0001 31 1 3.6431 -2.4374 2.5477 32 1 5.1674 -1.5235 2.4513 33 1 3.7983 -0.8747 3.3856 34 1 1.7619 -0.5562 3.2824 35 1 3.1803 1.2791 2.6633 36 1 1.8702 1.8728 1.6147 37 1 2.9890 4.8772 3.4263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252201420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = -34.346068 kcal Electronic energy + Delta-G solvation = -14989.766139 eV Core-core repulsion = 12765.389767 eV Total energy + Delta-G solvation = -2224.376372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16506 -34.36457 -33.01761 -32.32843 -29.66257 -26.80142 -25.86463 -24.72463 -22.31449 -20.78976 -20.15673 -18.62504 -16.48479 -14.95326 -14.71637 -14.48879 -14.11925 -13.98539 -13.48672 -12.86619 -12.21354 -12.12812 -11.97489 -11.90470 -11.68170 -11.34866 -11.26040 -10.81680 -10.70969 -10.67591 -10.52925 -10.21880 -10.14049 -9.75559 -9.61848 -9.51155 -9.03947 -8.40734 -7.11779 -5.98294 -3.98939 3.32925 3.40359 3.45489 4.47119 5.00667 5.06043 5.14482 5.37293 5.44558 5.48561 5.61732 5.76856 5.81785 5.87655 5.92849 6.05640 6.08742 6.18975 6.20425 6.31282 6.34110 6.38698 6.48038 6.57253 6.66967 6.73721 6.78182 7.04009 7.06985 7.39825 7.53274 7.86203 8.21653 8.52176 8.71278 9.11202 9.65496 11.12455 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.008611 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.262277 B = 3250.929308 C = 3486.721239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.130 4.130 8 H 0.079 0.921 9 C -0.145 4.145 10 C 0.102 3.898 11 H 0.061 0.939 12 N -0.682 5.682 13 C 0.191 3.809 14 C -0.509 4.509 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.326 0.674 35 H -0.010 1.010 36 H 0.031 0.969 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -9.804 -6.725 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.150 4.150 8 H 0.097 0.903 9 C -0.202 4.202 10 C -0.009 4.009 11 H 0.079 0.921 12 N -0.311 5.311 13 C 0.064 3.936 14 C -0.548 4.548 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.008 0.992 36 H 0.048 0.952 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.590 -9.419 -7.022 11.763 hybrid contribution 0.700 0.477 1.009 1.318 sum 1.290 -8.942 -6.012 10.852 Atomic orbital electron populations 1.21652 0.95047 1.00606 1.01751 1.21135 0.96051 1.00027 0.93070 0.90704 1.21598 0.95099 1.00260 0.98016 1.21532 0.96146 1.00778 0.97254 1.21525 0.99460 0.98898 0.94670 1.21918 0.98554 1.00524 0.93998 0.90265 1.21789 1.00156 0.99809 0.98480 1.21508 0.90471 0.96780 0.92105 0.92066 1.60790 1.62215 1.05215 1.02887 1.19604 0.92821 0.83786 0.97370 1.21276 1.23789 0.97664 1.12102 0.92124 1.24976 0.95304 0.97550 0.96808 1.69969 1.32561 1.12509 1.38788 0.86492 0.79048 0.79641 0.82524 1.19723 1.21214 1.21097 0.94017 0.90642 0.94369 0.92572 0.92525 0.92780 0.92052 0.92854 0.92634 0.93385 0.93382 0.92111 0.85663 0.99193 0.95151 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.04 37.16 0.34 -1.90 16 2 C -0.08 -1.45 1.99 -90.62 -0.18 -1.63 16 3 H 0.07 1.51 6.40 -51.93 -0.33 1.18 16 4 C -0.11 -1.57 5.20 -26.73 -0.14 -1.71 16 5 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 6 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 7 C -0.13 -2.18 1.74 -90.59 -0.16 -2.33 16 8 H 0.08 1.59 6.45 -51.93 -0.34 1.25 16 9 C -0.14 -2.27 8.69 37.16 0.32 -1.95 16 10 C 0.10 1.81 1.92 -67.69 -0.13 1.68 16 11 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 12 N -0.68 -14.38 5.46 -107.96 -0.59 -14.97 16 13 C 0.19 4.88 4.57 -4.98 -0.02 4.86 16 14 C -0.51 -14.42 9.36 -34.44 -0.32 -14.74 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.47 7.60 -51.93 -0.39 1.08 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.07 6.99 -51.93 -0.36 0.70 16 34 H 0.33 6.67 7.52 -39.29 -0.30 6.37 16 35 H -0.01 -0.26 6.33 -51.93 -0.33 -0.59 16 36 H 0.03 0.85 6.19 -51.92 -0.32 0.52 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -28.80 281.87 -7.88 -36.68 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.57 Total: 3.00 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.69 Total: -19.68 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.15 Total: -41.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.80 -7.88 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252201420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.335 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds