Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46883 * 2 1 4 4 C 1.52999 * 109.47257 * 239.99971 * 2 1 3 5 5 C 1.53003 * 109.47257 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47007 * 59.99839 * 5 4 2 7 7 C 1.52999 * 109.47243 * 300.00169 * 6 5 4 8 8 H 1.09001 * 109.47198 * 300.00148 * 7 6 5 9 9 C 1.52996 * 109.47243 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47007 * 119.99810 * 2 1 3 11 11 H 1.09001 * 109.47144 * 60.00350 * 10 2 1 12 12 N 1.46899 * 109.47374 * 300.00343 * 10 2 1 13 13 C 1.46902 * 110.99902 * 295.91155 * 12 10 2 14 14 C 1.50697 * 109.47165 * 175.18384 * 13 12 10 15 15 H 1.07993 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99749 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46825 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47031 * 120.00098 * 18 16 14 21 21 H 1.48495 * 109.46830 * 240.00107 * 18 16 14 22 22 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47140 * 300.00148 * 1 2 3 24 24 H 1.09004 * 109.46630 * 60.00120 * 1 2 3 25 25 H 1.09001 * 109.47198 * 299.99836 * 4 2 1 26 26 H 1.09005 * 109.46895 * 60.00155 * 4 2 1 27 27 H 1.08995 * 109.47456 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.46883 * 300.00029 * 5 4 2 29 29 H 1.09001 * 109.47171 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47144 * 60.00350 * 6 5 4 31 31 H 1.08998 * 109.47215 * 294.66381 * 9 7 6 32 32 H 1.08999 * 109.47442 * 54.66423 * 9 7 6 33 33 H 1.09003 * 109.47427 * 174.66689 * 9 7 6 34 34 H 1.00896 * 110.99890 * 171.96336 * 12 10 2 35 35 H 1.08998 * 109.47328 * 295.18866 * 13 12 10 36 36 H 1.09009 * 109.47046 * 55.18390 * 13 12 10 37 37 H 0.97001 * 120.00242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3076 1.2487 9 6 4.0816 -1.4407 2.4982 10 6 2.0400 -0.7212 1.2492 11 1 1.6767 -1.7489 1.2492 12 7 1.5503 -0.0288 2.4487 13 6 2.0994 1.3312 2.5325 14 6 1.4854 2.0494 3.7064 15 1 0.7601 1.5459 4.3283 16 6 1.8496 3.3494 3.9866 17 7 2.7325 3.9627 3.2290 18 14 1.0879 4.2399 5.4413 19 1 0.1299 3.3367 6.1281 20 1 2.1568 4.6414 6.3909 21 1 0.3720 5.4493 4.9617 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6768 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.9335 -1.2341 -2.1397 28 1 3.9330 0.3071 -1.2498 29 1 5.1706 -1.4407 -0.0003 30 1 3.7177 -2.4693 -0.0001 31 1 3.6431 -2.4374 2.5477 32 1 5.1674 -1.5235 2.4513 33 1 3.7983 -0.8747 3.3856 34 1 1.7619 -0.5562 3.2824 35 1 3.1803 1.2791 2.6633 36 1 1.8702 1.8728 1.6147 37 1 2.9890 4.8772 3.4263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252201420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = -51.844156 kcal Electronic energy + Delta-G solvation = -14990.524913 eV Core-core repulsion = 12765.389767 eV Total energy + Delta-G solvation = -2225.135146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55938 -36.06710 -34.43573 -34.22326 -31.19365 -28.68273 -27.06922 -26.32204 -24.27444 -22.04452 -21.48564 -20.13159 -18.57785 -16.76226 -16.46168 -15.83860 -15.70821 -15.36963 -14.76613 -14.47943 -13.99374 -13.72075 -13.46036 -13.27509 -13.17185 -12.92443 -12.67229 -12.54298 -12.51488 -12.17291 -11.98271 -11.71109 -11.55713 -11.29053 -11.17512 -11.04269 -10.80014 -10.59075 -8.89594 -8.19491 -6.29329 1.38889 1.39567 1.53302 2.40298 3.13042 3.65035 3.73633 3.92171 4.08957 4.25466 4.27239 4.48918 4.54520 4.56356 4.66582 4.79742 4.86236 4.91140 4.97762 5.02164 5.10197 5.18293 5.19037 5.25965 5.32785 5.36811 5.41711 5.46191 5.52392 5.62482 5.69858 5.70975 6.11299 6.58562 6.82985 6.98117 7.41127 8.91345 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.008611 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.262277 B = 3250.929308 C = 3486.721239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 H 0.031 0.969 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.127 4.127 8 H 0.033 0.967 9 C -0.140 4.140 10 C 0.100 3.900 11 H 0.086 0.914 12 N -0.682 5.682 13 C 0.216 3.784 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.064 0.936 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.331 0.669 35 H -0.036 1.036 36 H 0.000 1.000 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -11.652 -7.085 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.105 4.105 3 H 0.049 0.951 4 C -0.142 4.142 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.147 4.147 8 H 0.052 0.948 9 C -0.198 4.198 10 C -0.010 4.010 11 H 0.104 0.896 12 N -0.310 5.310 13 C 0.088 3.912 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.148 0.852 35 H -0.019 1.019 36 H 0.018 0.982 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.145 -11.288 -7.387 13.491 hybrid contribution 0.845 1.033 1.087 1.721 sum 0.990 -10.255 -6.300 12.076 Atomic orbital electron populations 1.21582 0.94639 1.01660 1.00625 1.21131 0.96419 0.98095 0.94814 0.95070 1.21548 0.95343 1.01036 0.96265 1.21551 0.95848 0.99923 0.98398 1.21494 1.00071 0.99502 0.92855 1.21825 0.97763 0.98656 0.96497 0.94831 1.21749 1.01113 1.00346 0.96573 1.21668 0.91300 0.97391 0.90636 0.89554 1.60676 1.62160 1.03637 1.04559 1.19109 0.91043 0.85933 0.95078 1.21657 1.23956 0.98422 1.12912 0.92236 1.25908 0.95665 0.98428 0.99780 1.70103 1.33816 1.12963 1.40598 0.85361 0.78333 0.78260 0.78803 1.18761 1.20395 1.20520 0.91714 0.94191 0.93129 0.90245 0.91515 0.89768 0.94285 0.91932 0.90255 0.90888 0.92193 0.94907 0.85207 1.01862 0.98192 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.04 71.98 0.65 -3.56 16 2 C -0.09 -2.95 1.99 -10.79 -0.02 -2.97 16 3 H 0.03 1.33 6.40 -2.39 -0.02 1.32 16 4 C -0.10 -2.68 5.20 30.59 0.16 -2.52 16 5 C -0.12 -3.01 5.92 30.59 0.18 -2.83 16 6 C -0.10 -2.59 5.20 30.59 0.16 -2.43 16 7 C -0.13 -4.26 1.74 -10.78 -0.02 -4.28 16 8 H 0.03 1.42 6.45 -2.39 -0.02 1.41 16 9 C -0.14 -4.30 8.69 71.98 0.63 -3.67 16 10 C 0.10 3.50 1.92 44.93 0.09 3.59 16 11 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 12 N -0.68 -29.44 5.46 -495.48 -2.70 -32.15 16 13 C 0.22 11.68 4.57 85.56 0.39 12.07 16 14 C -0.53 -31.01 9.36 25.60 0.24 -30.77 16 15 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 17 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 18 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.16 6.99 -2.39 -0.02 1.15 16 34 H 0.33 13.71 7.52 -89.70 -0.67 13.03 16 35 H -0.04 -2.12 6.33 -2.39 -0.02 -2.13 16 36 H 0.00 0.00 6.19 -2.38 -0.01 -0.01 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.39 281.87 2.87 -61.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.34 Total: 17.45 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.91 Total: -36.91 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -2.42 Total: -89.57 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.39 2.87 -61.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252201420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.682 kcal (2) G-P(sol) polarization free energy of solvation -64.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds