Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46905 * 109.46858 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99940 * 84.99687 * 9 7 6 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99855 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00011 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46984 * 60.00407 * 15 13 11 17 17 H 1.48504 * 109.46961 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47082 * 299.99872 * 15 13 11 19 19 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 20 20 H 1.09002 * 109.46695 * 59.99734 * 19 7 6 21 21 C 1.52997 * 109.47232 * 179.97438 * 19 7 6 22 22 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 24 24 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 31 31 H 1.00904 * 110.99628 * 208.94659 * 9 7 6 32 32 H 1.08992 * 109.47487 * 300.00141 * 10 9 7 33 33 H 1.09003 * 109.47270 * 60.00180 * 10 9 7 34 34 H 0.97008 * 119.99749 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47140 * 179.97438 * 21 19 7 36 36 H 1.09001 * 109.46922 * 300.00149 * 21 19 7 37 37 H 1.09002 * 109.47045 * 59.99942 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0582 -1.4153 2.4491 10 6 5.4057 -0.9554 2.8105 11 6 5.8723 -1.6866 4.0429 12 1 5.2320 -2.4199 4.5105 13 6 7.1165 -1.4194 4.5733 14 7 7.8960 -0.5261 4.0041 15 14 7.6951 -2.3263 6.1005 16 1 7.7276 -3.7855 5.8271 17 1 9.0568 -1.8604 6.4667 18 1 6.7609 -2.0533 7.2220 19 6 2.0394 -0.7216 1.2493 20 1 1.6758 -1.7491 1.2491 21 6 1.5295 -0.0009 2.4988 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6765 -1.7490 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9333 -1.2354 -2.1390 28 1 3.9337 0.3056 -1.2487 29 1 5.1695 -1.4435 0.0008 30 1 3.7157 -2.4710 0.0001 31 1 3.4176 -1.2993 3.2200 32 1 6.0911 -1.1561 1.9872 33 1 5.3824 0.1157 3.0110 34 1 8.7716 -0.3384 4.3771 35 1 0.4395 -0.0001 2.4984 36 1 1.8925 -0.5154 3.3886 37 1 1.8932 1.0267 2.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252210832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = -35.995608 kcal Electronic energy + Delta-G solvation = -14600.214603 eV Core-core repulsion = 12375.766702 eV Total energy + Delta-G solvation = -2224.447901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13254 -34.77611 -32.79491 -32.49220 -29.94653 -27.02737 -25.92417 -24.93697 -21.95355 -20.83431 -19.98977 -19.40216 -16.43888 -14.96013 -14.82078 -14.43605 -14.38135 -14.13828 -13.63543 -12.97583 -12.61378 -12.34747 -11.98038 -11.79687 -11.74251 -11.56230 -11.21032 -11.03448 -10.87251 -10.75490 -10.58100 -10.49712 -10.13252 -10.05744 -9.74207 -9.42829 -9.06504 -8.43879 -7.18815 -5.99342 -4.01107 3.35658 3.39238 3.42579 4.45674 4.81183 4.91425 4.96447 5.28130 5.35321 5.36241 5.51129 5.62019 5.66553 5.70502 5.76866 5.81250 5.99498 6.00505 6.03317 6.14346 6.15901 6.25542 6.34377 6.42456 6.49421 6.61512 6.68784 6.77818 6.90469 7.36195 7.49875 7.84174 8.20079 8.50274 8.70837 9.08695 9.63643 11.11728 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050775 B = 0.006793 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.319459 B = 4121.028977 C = 4447.024949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.105 4.105 7 C 0.093 3.907 8 H 0.032 0.968 9 N -0.689 5.689 10 C 0.196 3.804 11 C -0.514 4.514 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.086 4.086 20 H 0.073 0.927 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.329 0.671 32 H 0.027 0.973 33 H -0.016 1.016 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.490 1.328 -8.254 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.018 4.018 8 H 0.050 0.950 9 N -0.321 5.321 10 C 0.069 3.931 11 C -0.552 4.552 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.104 4.104 20 H 0.092 0.908 21 C -0.210 4.210 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.067 0.866 -8.567 14.824 hybrid contribution 0.346 0.489 1.188 1.331 sum -11.721 1.355 -7.379 13.916 Atomic orbital electron populations 1.21881 0.95706 1.01575 1.01252 1.21137 0.94950 0.99528 0.94826 0.91552 1.21576 0.95934 1.00412 0.96950 1.21549 0.95230 1.00721 0.98244 1.21500 1.00779 0.99281 0.92783 1.21441 0.92312 0.95483 0.92554 0.95030 1.60725 1.05910 1.59636 1.05855 1.19557 0.84390 0.93145 0.96027 1.21180 1.01141 1.22322 1.10606 0.92117 1.24989 0.96670 0.95370 0.97550 1.69961 1.09966 1.33272 1.40625 0.86556 0.77620 0.80126 0.83057 1.20170 1.21363 1.20310 1.21288 0.95643 0.99633 0.93880 0.90842 1.21945 1.00459 1.00484 0.98155 0.92856 0.92515 0.93214 0.92129 0.92663 0.92413 0.92434 0.91901 0.91868 0.85218 0.95476 0.99843 0.92920 0.92695 0.92064 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.84 37.16 0.33 -1.21 16 2 C -0.09 -1.07 2.25 -90.62 -0.20 -1.27 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.34 5.20 -26.73 -0.14 -1.48 16 5 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 6 C -0.11 -1.80 5.43 -26.73 -0.15 -1.95 16 7 C 0.09 1.70 1.97 -67.71 -0.13 1.56 16 8 H 0.03 0.63 7.80 -51.93 -0.41 0.23 16 9 N -0.69 -15.19 6.30 -107.99 -0.68 -15.87 16 10 C 0.20 5.27 5.24 -4.97 -0.03 5.24 16 11 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 12 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C -0.09 -1.26 1.91 -90.62 -0.17 -1.43 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.15 -2.15 8.61 37.16 0.32 -1.83 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.33 6.94 6.15 -39.29 -0.24 6.70 16 32 H 0.03 0.79 7.43 -51.93 -0.39 0.40 16 33 H -0.02 -0.47 8.06 -51.93 -0.42 -0.88 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 284.09 15.07 4.28 4.28 Total: -1.00 -29.80 284.09 -8.03 -37.84 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.60 Total: 1.20 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.75 Total: -17.86 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.06 Total: -42.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.80 -8.03 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252210832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.840 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds