Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46905 * 109.46858 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99940 * 84.99687 * 9 7 6 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99855 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00011 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46984 * 60.00407 * 15 13 11 17 17 H 1.48504 * 109.46961 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47082 * 299.99872 * 15 13 11 19 19 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 20 20 H 1.09002 * 109.46695 * 59.99734 * 19 7 6 21 21 C 1.52997 * 109.47232 * 179.97438 * 19 7 6 22 22 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 24 24 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 31 31 H 1.00904 * 110.99628 * 208.94659 * 9 7 6 32 32 H 1.08992 * 109.47487 * 300.00141 * 10 9 7 33 33 H 1.09003 * 109.47270 * 60.00180 * 10 9 7 34 34 H 0.97008 * 119.99749 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47140 * 179.97438 * 21 19 7 36 36 H 1.09001 * 109.46922 * 300.00149 * 21 19 7 37 37 H 1.09002 * 109.47045 * 59.99942 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0582 -1.4153 2.4491 10 6 5.4057 -0.9554 2.8105 11 6 5.8723 -1.6866 4.0429 12 1 5.2320 -2.4199 4.5105 13 6 7.1165 -1.4194 4.5733 14 7 7.8960 -0.5261 4.0041 15 14 7.6951 -2.3263 6.1005 16 1 7.7276 -3.7855 5.8271 17 1 9.0568 -1.8604 6.4667 18 1 6.7609 -2.0533 7.2220 19 6 2.0394 -0.7216 1.2493 20 1 1.6758 -1.7491 1.2491 21 6 1.5295 -0.0009 2.4988 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6765 -1.7490 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9333 -1.2354 -2.1390 28 1 3.9337 0.3056 -1.2487 29 1 5.1695 -1.4435 0.0008 30 1 3.7157 -2.4710 0.0001 31 1 3.4176 -1.2993 3.2200 32 1 6.0911 -1.1561 1.9872 33 1 5.3824 0.1157 3.0110 34 1 8.7716 -0.3384 4.3771 35 1 0.4395 -0.0001 2.4984 36 1 1.8925 -0.5154 3.3886 37 1 1.8932 1.0267 2.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252210832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = -54.461434 kcal Electronic energy + Delta-G solvation = -14601.015341 eV Core-core repulsion = 12375.766702 eV Total energy + Delta-G solvation = -2225.248640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40973 -36.50042 -34.52887 -33.96220 -31.49224 -28.54358 -27.47427 -26.23469 -23.94694 -22.03580 -21.40457 -20.62674 -18.59526 -16.83433 -16.41755 -15.86958 -15.58986 -15.43859 -14.99702 -14.40516 -14.35542 -13.82001 -13.50556 -13.35281 -12.97552 -12.73822 -12.66129 -12.63617 -12.48745 -12.22199 -12.02414 -11.92065 -11.69975 -11.41738 -11.28577 -10.85776 -10.74143 -10.66669 -9.09625 -8.23823 -6.35927 1.39424 1.43723 1.51776 2.38870 3.08897 3.47400 3.78041 3.83239 3.99489 4.20688 4.30307 4.46174 4.52120 4.57863 4.61379 4.69715 4.80792 4.92029 5.00349 5.02356 5.07369 5.11283 5.15901 5.20766 5.26993 5.30615 5.36420 5.41073 5.41578 5.57928 5.60098 5.68434 6.03251 6.48691 6.74704 6.90903 7.35458 8.87766 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050775 B = 0.006793 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.319459 B = 4121.028977 C = 4447.024949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.060 0.940 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.089 3.911 8 H 0.009 0.991 9 N -0.687 5.687 10 C 0.214 3.786 11 C -0.539 4.539 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.078 4.078 20 H 0.075 0.925 21 C -0.151 4.151 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.334 0.666 32 H -0.004 1.004 33 H -0.047 1.047 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 0.690 -8.354 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.142 4.142 7 C -0.021 4.021 8 H 0.027 0.973 9 N -0.320 5.320 10 C 0.086 3.914 11 C -0.577 4.577 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.097 4.097 20 H 0.094 0.906 21 C -0.209 4.209 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.014 0.986 33 H -0.029 1.029 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.850 0.228 -8.680 16.347 hybrid contribution 0.903 0.712 1.176 1.645 sum -12.947 0.940 -7.504 14.994 Atomic orbital electron populations 1.21834 0.93432 1.02317 1.02299 1.21129 0.96746 0.98754 0.93609 0.92192 1.21572 0.94017 1.01149 0.97674 1.21519 0.96962 1.00005 0.96731 1.21476 0.98716 0.99789 0.94185 1.21598 0.95331 0.93884 0.91308 0.97283 1.60645 1.04103 1.59917 1.07287 1.19160 0.86503 0.91205 0.94571 1.21542 1.01870 1.22811 1.11444 0.91772 1.26003 0.96610 0.96065 1.01118 1.70102 1.10429 1.34625 1.42385 0.85345 0.77312 0.78794 0.78597 1.19256 1.20657 1.18974 1.21239 0.92294 1.00344 0.95786 0.90628 1.21937 1.02241 0.99626 0.97058 0.92232 0.92161 0.91580 0.91433 0.90201 0.90771 0.92923 0.95292 0.91784 0.84589 0.98563 1.02916 0.92588 0.89820 0.93597 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.84 71.98 0.64 -1.82 16 2 C -0.08 -1.90 2.25 -10.79 -0.02 -1.92 16 3 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -2.28 5.20 30.59 0.16 -2.12 16 5 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 6 C -0.10 -3.63 5.43 30.60 0.17 -3.47 16 7 C 0.09 3.35 1.97 44.92 0.09 3.44 16 8 H 0.01 0.39 7.80 -2.39 -0.02 0.37 16 9 N -0.69 -31.40 6.30 -495.56 -3.12 -34.53 16 10 C 0.21 12.11 5.24 85.56 0.45 12.56 16 11 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 12 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 15 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 C -0.08 -2.22 1.91 -10.79 -0.02 -2.24 16 20 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 21 C -0.15 -4.10 8.61 71.98 0.62 -3.48 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.33 14.49 6.15 -89.69 -0.55 13.94 16 32 H 0.00 -0.23 7.43 -2.39 -0.02 -0.25 16 33 H -0.05 -2.87 8.06 -2.39 -0.02 -2.89 16 34 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 35 H 0.08 1.78 6.43 -2.39 -0.02 1.77 16 36 H 0.05 1.37 6.21 -2.39 -0.01 1.35 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -65.68 284.09 2.61 -63.08 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.46 Total: 15.27 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 2.95 Total: -33.15 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.84 Total: -92.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.68 2.61 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252210832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.614 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds