Wall clock time and date at job start Sun Mar 29 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47529 * 2 1 4 4 C 1.53009 * 109.47100 * 119.99830 * 2 1 3 5 5 C 1.52999 * 109.47100 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47494 * 179.97438 * 5 4 2 7 7 N 1.46906 * 109.47107 * 59.99429 * 5 4 2 8 8 C 1.46904 * 110.99820 * 155.00276 * 7 5 4 9 9 C 1.50695 * 109.46907 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.53005 * 109.47121 * 300.00088 * 5 4 2 18 18 C 1.52999 * 109.47356 * 59.99605 * 17 5 4 19 19 H 1.09004 * 109.46838 * 60.00245 * 18 17 5 20 20 C 1.52995 * 109.47303 * 180.02562 * 18 17 5 21 21 C 1.52996 * 109.47041 * 239.99348 * 2 1 3 22 22 H 1.09001 * 109.46864 * 300.00159 * 1 2 3 23 23 H 1.08997 * 109.47038 * 60.00207 * 1 2 3 24 24 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46907 * 59.99998 * 4 2 1 26 26 H 1.09002 * 109.46715 * 299.99240 * 4 2 1 27 27 H 1.00901 * 110.99794 * 31.05062 * 7 5 4 28 28 H 1.09002 * 109.47117 * 59.99885 * 8 7 5 29 29 H 1.09000 * 109.46655 * 300.00218 * 8 7 5 30 30 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 31 31 H 1.09000 * 109.47249 * 180.02562 * 17 5 4 32 32 H 1.09004 * 109.46947 * 299.99917 * 17 5 4 33 33 H 1.08997 * 109.47214 * 180.02562 * 20 18 17 34 34 H 1.09008 * 109.46831 * 299.99964 * 20 18 17 35 35 H 1.08996 * 109.47458 * 59.99889 * 20 18 17 36 36 H 1.09004 * 109.47453 * 300.00177 * 21 2 1 37 37 H 1.09001 * 109.47322 * 60.00306 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7207 1.2497 6 1 3.9334 -1.2341 2.1398 7 7 4.0592 0.6645 1.2498 8 6 5.4064 0.7470 1.8296 9 6 5.8734 2.1796 1.8133 10 1 5.2337 2.9517 1.4120 11 6 7.1175 2.5048 2.3108 12 7 7.8965 1.5648 2.8001 13 14 7.6968 4.2806 2.2901 14 1 7.2915 4.9484 3.5531 15 1 7.0835 4.9879 1.1373 16 1 9.1759 4.3174 2.1633 17 6 4.0805 -1.4416 0.0004 18 6 3.5705 -0.7205 -1.2489 19 1 3.9335 0.3073 -1.2487 20 6 4.0805 -1.4417 -2.4981 21 6 2.0400 -0.7214 -1.2491 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6767 -1.7488 1.2493 26 1 1.6767 -0.2073 2.1393 27 1 3.4185 1.2742 1.7356 28 1 6.0920 0.1342 1.2443 29 1 5.3824 0.3846 2.8574 30 1 7.5955 0.6427 2.8112 31 1 5.1705 -1.4416 0.0008 32 1 3.7176 -2.4694 0.0002 33 1 3.7175 -0.9277 -3.3881 34 1 5.1706 -1.4416 -2.4981 35 1 3.7173 -2.4694 -2.4981 36 1 1.6766 -1.7491 -1.2491 37 1 1.6767 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252210885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:37 Heat of formation + Delta-G solvation = -42.137601 kcal Electronic energy + Delta-G solvation = -14691.628218 eV Core-core repulsion = 12466.913980 eV Total energy + Delta-G solvation = -2224.714238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.02453 -34.74629 -33.17269 -32.56345 -29.40645 -26.40040 -26.08436 -25.25195 -22.03164 -21.10608 -20.22341 -18.63094 -16.86542 -15.16303 -14.79830 -14.42013 -13.94868 -13.91141 -13.65002 -13.12204 -12.59403 -12.28171 -12.17167 -11.84880 -11.79812 -11.43443 -11.37231 -11.00873 -10.87776 -10.68078 -10.45957 -10.37907 -10.07639 -10.02172 -9.73489 -9.54160 -8.56696 -8.38082 -7.30669 -6.34868 -4.03243 3.45072 3.49646 3.65505 4.55079 4.93643 4.96992 5.03923 5.30869 5.40162 5.42503 5.49720 5.61942 5.67104 5.77561 5.82276 5.92223 5.97079 6.03132 6.09009 6.16665 6.19120 6.26085 6.30193 6.33962 6.59361 6.66178 6.71622 6.79095 6.99916 7.05133 7.22332 7.86649 8.22141 8.53540 8.62715 8.90848 9.68645 11.04986 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035896 B = 0.007565 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.833724 B = 3700.487471 C = 3918.320279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.082 0.918 4 C -0.111 4.111 5 C 0.082 3.918 6 H 0.030 0.970 7 N -0.672 5.672 8 C 0.185 3.815 9 C -0.593 4.593 10 H 0.055 0.945 11 C 0.013 3.987 12 N -0.916 5.916 13 Si 1.075 2.925 14 H -0.289 1.289 15 H -0.288 1.288 16 H -0.285 1.285 17 C -0.096 4.096 18 C -0.085 4.085 19 H 0.090 0.910 20 C -0.146 4.146 21 C -0.100 4.100 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.329 0.671 28 H 0.018 0.982 29 H -0.028 1.028 30 H 0.267 0.733 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 -5.204 -6.454 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.029 4.029 6 H 0.048 0.952 7 N -0.303 5.303 8 C 0.057 3.943 9 C -0.631 4.631 10 H 0.074 0.926 11 C -0.190 4.190 12 N -0.552 5.552 13 Si 0.903 3.097 14 H -0.216 1.216 15 H -0.214 1.214 16 H -0.210 1.210 17 C -0.134 4.134 18 C -0.103 4.103 19 H 0.108 0.892 20 C -0.203 4.203 21 C -0.137 4.137 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.036 0.964 29 H -0.010 1.010 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.492 -4.252 -6.704 13.157 hybrid contribution -1.427 -1.253 0.622 1.998 sum -11.919 -5.505 -6.082 14.469 Atomic orbital electron populations 1.21855 0.96268 1.01051 1.01197 1.21045 0.93918 1.00986 0.94665 0.89943 1.21739 0.95464 1.00006 0.97660 1.21480 0.93207 0.91925 0.96276 0.95207 1.60598 1.05146 1.04656 1.59909 1.19678 0.85705 0.97824 0.91063 1.22040 1.04131 0.92983 1.43989 0.92629 1.25851 0.93423 1.06143 0.93612 1.70763 1.38835 1.02174 1.43458 0.83461 0.76078 0.73927 0.76203 1.21579 1.21403 1.21050 1.21498 1.00484 0.96950 0.94470 1.21010 0.94395 1.01506 0.93429 0.89210 1.21841 1.00967 0.99688 0.97808 1.21566 0.95781 0.99398 0.96991 0.93070 0.93061 0.93319 0.92388 0.92628 0.85376 0.96411 1.01003 0.92295 0.92257 0.93294 0.93294 0.92920 0.93595 0.93105 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.09 -1.21 2.56 -90.62 -0.23 -1.44 16 3 H 0.08 1.29 7.48 -51.93 -0.39 0.90 16 4 C -0.11 -1.62 4.58 -26.73 -0.12 -1.74 16 5 C 0.08 1.47 2.82 -67.71 -0.19 1.27 16 6 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 7 N -0.67 -14.36 4.81 -107.99 -0.52 -14.88 16 8 C 0.18 4.86 4.55 -4.98 -0.02 4.84 16 9 C -0.59 -17.15 9.32 -34.44 -0.32 -17.48 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 12 N -0.92 -28.47 13.65 55.43 0.76 -27.71 16 13 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.10 -1.61 4.81 -26.73 -0.13 -1.74 16 18 C -0.08 -1.32 2.57 -90.59 -0.23 -1.55 16 19 H 0.09 1.66 7.60 -51.93 -0.39 1.27 16 20 C -0.15 -1.97 9.19 37.16 0.34 -1.63 16 21 C -0.10 -1.34 4.49 -26.71 -0.12 -1.46 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.33 6.88 8.18 -39.29 -0.32 6.56 16 28 H 0.02 0.50 7.30 -51.93 -0.38 0.12 16 29 H -0.03 -0.77 7.92 -51.93 -0.41 -1.18 16 30 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 31 H 0.06 1.12 7.45 -51.93 -0.39 0.74 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -29.95 287.54 -8.13 -38.09 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.84 Total: 1.45 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.78 Total: -21.97 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.59 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.95 -8.13 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252210885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.049 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds