Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47529 * 2 1 4 4 C 1.53009 * 109.47100 * 119.99830 * 2 1 3 5 5 C 1.52999 * 109.47100 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47494 * 179.97438 * 5 4 2 7 7 N 1.46906 * 109.47107 * 59.99429 * 5 4 2 8 8 C 1.46904 * 110.99820 * 155.00276 * 7 5 4 9 9 C 1.50695 * 109.46907 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.53005 * 109.47121 * 300.00088 * 5 4 2 18 18 C 1.52999 * 109.47356 * 59.99605 * 17 5 4 19 19 H 1.09004 * 109.46838 * 60.00245 * 18 17 5 20 20 C 1.52995 * 109.47303 * 180.02562 * 18 17 5 21 21 C 1.52996 * 109.47041 * 239.99348 * 2 1 3 22 22 H 1.09001 * 109.46864 * 300.00159 * 1 2 3 23 23 H 1.08997 * 109.47038 * 60.00207 * 1 2 3 24 24 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46907 * 59.99998 * 4 2 1 26 26 H 1.09002 * 109.46715 * 299.99240 * 4 2 1 27 27 H 1.00901 * 110.99794 * 31.05062 * 7 5 4 28 28 H 1.09002 * 109.47117 * 59.99885 * 8 7 5 29 29 H 1.09000 * 109.46655 * 300.00218 * 8 7 5 30 30 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 31 31 H 1.09000 * 109.47249 * 180.02562 * 17 5 4 32 32 H 1.09004 * 109.46947 * 299.99917 * 17 5 4 33 33 H 1.08997 * 109.47214 * 180.02562 * 20 18 17 34 34 H 1.09008 * 109.46831 * 299.99964 * 20 18 17 35 35 H 1.08996 * 109.47458 * 59.99889 * 20 18 17 36 36 H 1.09004 * 109.47453 * 300.00177 * 21 2 1 37 37 H 1.09001 * 109.47322 * 60.00306 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7207 1.2497 6 1 3.9334 -1.2341 2.1398 7 7 4.0592 0.6645 1.2498 8 6 5.4064 0.7470 1.8296 9 6 5.8734 2.1796 1.8133 10 1 5.2337 2.9517 1.4120 11 6 7.1175 2.5048 2.3108 12 7 7.8965 1.5648 2.8001 13 14 7.6968 4.2806 2.2901 14 1 7.2915 4.9484 3.5531 15 1 7.0835 4.9879 1.1373 16 1 9.1759 4.3174 2.1633 17 6 4.0805 -1.4416 0.0004 18 6 3.5705 -0.7205 -1.2489 19 1 3.9335 0.3073 -1.2487 20 6 4.0805 -1.4417 -2.4981 21 6 2.0400 -0.7214 -1.2491 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6767 -1.7488 1.2493 26 1 1.6767 -0.2073 2.1393 27 1 3.4185 1.2742 1.7356 28 1 6.0920 0.1342 1.2443 29 1 5.3824 0.3846 2.8574 30 1 7.5955 0.6427 2.8112 31 1 5.1705 -1.4416 0.0008 32 1 3.7176 -2.4694 0.0002 33 1 3.7175 -0.9277 -3.3881 34 1 5.1706 -1.4416 -2.4981 35 1 3.7173 -2.4694 -2.4981 36 1 1.6766 -1.7491 -1.2491 37 1 1.6767 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252210885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = -60.057752 kcal Electronic energy + Delta-G solvation = -14692.405294 eV Core-core repulsion = 12466.913980 eV Total energy + Delta-G solvation = -2225.491314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35244 -36.57771 -34.56654 -34.29773 -31.05925 -27.54652 -27.39150 -27.10599 -24.15993 -22.44252 -21.37534 -20.00079 -19.05351 -16.61499 -16.21602 -16.02970 -15.65964 -15.31273 -15.26965 -14.50629 -14.20664 -13.85786 -13.34020 -13.27774 -13.09916 -12.81672 -12.67512 -12.61240 -12.52435 -12.35807 -11.94384 -11.88813 -11.54324 -11.27295 -11.00766 -10.84904 -10.70260 -10.61338 -9.15574 -8.72985 -6.43489 1.51256 1.61155 1.79563 2.54149 3.11731 3.44632 3.78708 3.83442 3.94674 4.23612 4.27803 4.41825 4.47125 4.61309 4.70518 4.78011 4.81564 4.84364 4.88053 4.93269 4.97062 5.04384 5.05918 5.08131 5.15835 5.30023 5.34101 5.47073 5.55216 5.58605 5.74774 5.78858 6.02265 6.39094 6.56911 6.72244 7.39346 8.66429 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035896 B = 0.007565 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.833724 B = 3700.487471 C = 3918.320279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.057 0.943 4 C -0.102 4.102 5 C 0.076 3.924 6 H 0.012 0.988 7 N -0.665 5.665 8 C 0.199 3.801 9 C -0.608 4.608 10 H 0.056 0.944 11 C -0.039 4.039 12 N -0.938 5.938 13 Si 1.126 2.874 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.282 1.282 17 C -0.094 4.094 18 C -0.084 4.084 19 H 0.052 0.948 20 C -0.141 4.141 21 C -0.094 4.094 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.332 0.668 28 H -0.008 1.008 29 H -0.052 1.052 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -5.040 -7.420 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.076 0.924 4 C -0.140 4.140 5 C -0.034 4.034 6 H 0.030 0.970 7 N -0.296 5.296 8 C 0.071 3.929 9 C -0.646 4.646 10 H 0.074 0.926 11 C -0.236 4.236 12 N -0.575 5.575 13 Si 0.946 3.054 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.208 1.208 17 C -0.132 4.132 18 C -0.102 4.102 19 H 0.070 0.930 20 C -0.199 4.199 21 C -0.131 4.131 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.010 0.990 29 H -0.035 1.035 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.463 -4.108 -7.677 15.204 hybrid contribution -0.841 -1.370 0.918 1.852 sum -13.305 -5.478 -6.759 15.897 Atomic orbital electron populations 1.21783 0.93833 1.02217 1.01850 1.21020 0.95875 0.99397 0.94274 0.92434 1.21696 0.92173 1.01690 0.98462 1.21652 0.96050 0.89553 0.96176 0.97026 1.60507 1.03109 1.07138 1.58876 1.19332 0.87997 0.96218 0.89353 1.22401 1.04478 0.94014 1.43717 0.92601 1.27515 0.93782 1.09855 0.92467 1.70903 1.39489 1.01901 1.45237 0.82828 0.75834 0.69026 0.77662 1.19573 1.19437 1.20768 1.21497 0.98441 0.98525 0.94755 1.20949 0.96353 0.99306 0.93618 0.92972 1.21796 1.00076 1.00756 0.97234 1.21532 0.93560 1.00697 0.97307 0.92854 0.92105 0.91841 0.90028 0.92466 0.85050 0.98981 1.03482 0.93892 0.95649 0.90625 0.91852 0.94393 0.91609 0.91104 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.09 -2.21 2.56 -10.79 -0.03 -2.23 16 3 H 0.06 1.75 7.48 -2.39 -0.02 1.73 16 4 C -0.10 -2.82 4.58 30.60 0.14 -2.68 16 5 C 0.08 2.75 2.82 44.92 0.13 2.87 16 6 H 0.01 0.47 7.80 -2.39 -0.02 0.45 16 7 N -0.67 -29.36 4.81 -495.56 -2.39 -31.74 16 8 C 0.20 11.01 4.55 85.55 0.39 11.40 16 9 C -0.61 -36.02 9.32 25.60 0.24 -35.79 16 10 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 11 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 12 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16 13 Si 1.13 51.57 29.90 68.60 2.05 53.62 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 C -0.09 -3.17 4.81 30.60 0.15 -3.03 16 18 C -0.08 -2.53 2.57 -10.78 -0.03 -2.56 16 19 H 0.05 1.97 7.60 -2.39 -0.02 1.95 16 20 C -0.14 -3.61 9.19 71.98 0.66 -2.95 16 21 C -0.09 -2.26 4.49 30.61 0.14 -2.12 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 27 H 0.33 14.18 8.18 -89.69 -0.73 13.45 16 28 H -0.01 -0.47 7.30 -2.39 -0.02 -0.49 16 29 H -0.05 -3.09 7.92 -2.39 -0.02 -3.11 16 30 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 31 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -66.20 287.54 3.24 -62.96 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.37 Total: 15.69 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 2.91 Total: -40.99 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -2.09 Total: -91.28 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -66.20 3.24 -62.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252210885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.901 kcal (2) G-P(sol) polarization free energy of solvation -66.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds