Wall clock time and date at job start Sun Mar 29 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.52886 * 2 1 4 4 C 1.53091 * 109.48929 * 239.90925 * 2 1 3 5 5 C 1.53117 * 109.15707 * 182.39590 * 4 2 1 6 6 C 1.53036 * 109.27831 * 57.65102 * 5 4 2 7 7 N 1.46856 * 109.52317 * 300.82404 * 6 5 4 8 8 C 1.46901 * 110.99833 * 185.84104 * 7 6 5 9 9 C 1.53001 * 109.47540 * 70.39508 * 8 7 6 10 10 C 1.50695 * 109.47150 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00068 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99633 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00181 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47206 * 89.99832 * 14 12 10 16 16 H 1.48507 * 109.47241 * 209.99687 * 14 12 10 17 17 H 1.48506 * 109.47273 * 329.99673 * 14 12 10 18 18 C 1.46838 * 111.19655 * 61.74243 * 7 6 5 19 19 H 1.09003 * 109.46424 * 58.27481 * 18 7 6 20 20 C 1.53005 * 109.45966 * 178.25450 * 18 7 6 21 21 H 1.09004 * 109.47356 * 299.89628 * 1 2 3 22 22 H 1.09000 * 109.47389 * 59.90580 * 1 2 3 23 23 H 1.09000 * 109.46502 * 179.90418 * 1 2 3 24 24 H 1.09003 * 109.53068 * 62.49008 * 4 2 1 25 25 H 1.09002 * 109.57550 * 302.32850 * 4 2 1 26 26 H 1.09004 * 109.50122 * 297.71553 * 5 4 2 27 27 H 1.08995 * 109.53980 * 177.61421 * 5 4 2 28 28 H 1.08999 * 109.46521 * 180.81050 * 6 5 4 29 29 H 1.09002 * 109.46436 * 60.83829 * 6 5 4 30 30 H 1.09000 * 109.46814 * 190.39819 * 8 7 6 31 31 H 1.09003 * 109.47102 * 310.39664 * 8 7 6 32 32 H 1.08999 * 109.46926 * 300.00364 * 9 8 7 33 33 H 1.09003 * 109.46796 * 59.99969 * 9 8 7 34 34 H 0.96995 * 120.00110 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47216 * 53.30330 * 20 18 7 36 36 H 1.09005 * 109.47058 * 173.30456 * 20 18 7 37 37 H 1.09002 * 109.47127 * 293.30257 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7236 -1.2487 5 6 3.5707 -0.7717 -1.2111 6 6 4.0228 -1.4727 0.0720 7 7 3.5093 -0.7419 1.2376 8 6 4.0376 -1.3056 2.4870 9 6 5.5286 -0.9823 2.6022 10 6 6.0704 -1.5601 3.8842 11 1 5.4168 -2.1039 4.5500 12 6 7.4006 -1.3945 4.2072 13 7 8.1966 -0.7326 3.3961 14 14 8.0723 -2.1113 5.7959 15 1 8.5607 -3.4916 5.5485 16 1 9.1941 -1.2692 6.2836 17 1 6.9961 -2.1429 6.8187 18 6 2.0411 -0.7233 1.2481 19 1 1.6649 -1.7464 1.2545 20 6 1.5494 0.0084 2.4986 21 1 -0.3634 0.5122 0.8909 22 1 -0.3634 0.5153 -0.8891 23 1 -0.3632 -1.0277 -0.0017 24 1 1.7150 -0.1868 -2.1397 25 1 1.6449 -1.7389 -1.2700 26 1 3.9673 0.2435 -1.2301 27 1 3.9395 -1.3227 -2.0761 28 1 5.1119 -1.4958 0.1088 29 1 3.6374 -2.4923 0.0839 30 1 3.5055 -0.8731 3.3343 31 1 3.8995 -2.3869 2.4848 32 1 6.0607 -1.4147 1.7549 33 1 5.6668 0.0990 2.6045 34 1 9.1324 -0.6164 3.6230 35 1 2.0202 0.9899 2.5539 36 1 0.4670 0.1270 2.4482 37 1 1.8107 -0.5703 3.3845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252432550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:41 Heat of formation + Delta-G solvation = -23.277078 kcal Electronic energy + Delta-G solvation = -14637.976918 eV Core-core repulsion = 12414.080534 eV Total energy + Delta-G solvation = -2223.896385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17106 -34.64027 -32.81144 -32.64795 -29.58153 -27.60820 -25.79727 -24.70987 -22.25770 -20.97672 -19.75528 -19.28694 -16.39288 -15.19319 -14.91365 -14.49827 -14.36815 -14.24889 -13.54721 -12.99687 -12.62823 -12.35809 -12.08203 -11.90596 -11.70861 -11.47952 -11.38903 -11.01696 -10.90206 -10.62529 -10.52197 -10.47338 -10.05410 -9.93791 -9.55683 -9.24117 -9.04763 -8.28558 -7.58998 -5.95780 -3.97905 3.34044 3.40153 3.43529 4.38978 4.56203 4.92644 4.96892 5.11647 5.36096 5.39989 5.58908 5.62591 5.65776 5.74299 5.74891 5.86866 5.96783 6.01991 6.12383 6.14061 6.26513 6.28870 6.35189 6.46269 6.52402 6.55364 6.62495 6.73307 7.08433 7.62701 7.69650 7.88312 7.99111 8.15565 8.49053 9.09785 9.65402 11.15654 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051913 B = 0.006837 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.238952 B = 4094.176332 C = 4455.069612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.056 3.944 7 N -0.534 5.534 8 C 0.058 3.942 9 C 0.030 3.970 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.086 3.914 19 H 0.029 0.971 20 C -0.150 4.150 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 0.508 -7.324 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.072 4.072 7 N -0.259 5.259 8 C -0.069 4.069 9 C -0.008 4.008 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.022 4.022 19 H 0.047 0.953 20 C -0.207 4.207 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.737 1.048 -7.369 14.753 hybrid contribution 0.243 -1.294 0.927 1.610 sum -12.495 -0.246 -6.441 14.059 Atomic orbital electron populations 1.21890 0.95634 1.01439 1.01494 1.21175 0.94484 1.00406 0.94286 0.90466 1.21622 0.96169 0.99973 0.97349 1.21592 0.95185 1.01678 0.97000 1.22074 1.01133 0.94015 0.90001 1.62038 1.05715 1.54757 1.03346 1.22425 0.99717 0.95409 0.89315 1.19066 0.87796 0.97564 0.96328 1.21213 0.94445 1.34634 1.05686 0.92897 1.24990 0.97110 0.95354 0.96862 1.69974 1.05281 1.41308 1.36717 0.86612 0.78653 0.78964 0.83863 1.20746 1.21215 1.19915 1.21552 0.88966 0.96957 0.94772 0.95285 1.21991 0.99949 1.01546 0.97219 0.92305 0.92952 0.93111 0.92393 0.92718 0.91192 0.92148 0.89813 0.95983 0.91485 0.96558 0.96670 0.95800 0.93051 0.91683 0.92596 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.88 37.16 0.33 -1.24 16 2 C -0.08 -1.12 2.40 -90.55 -0.22 -1.33 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.11 -1.43 5.28 -26.62 -0.14 -1.57 16 5 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 6 C 0.06 0.98 5.30 -3.83 -0.02 0.96 16 7 N -0.53 -10.09 4.46 -226.68 -1.01 -11.10 16 8 C 0.06 1.27 4.69 -3.82 -0.02 1.25 16 9 C 0.03 0.80 5.00 -27.88 -0.14 0.66 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.09 1.35 1.96 -67.72 -0.13 1.22 16 19 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 20 C -0.15 -2.19 8.42 37.16 0.31 -1.88 16 21 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.65 6.42 -51.93 -0.33 1.32 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.44 5.59 -51.93 -0.29 1.15 16 31 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.67 6.12 -51.93 -0.32 0.36 16 37 H 0.06 0.90 6.42 -51.93 -0.33 0.57 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -29.98 282.36 -8.20 -38.18 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.56 Total: -4.16 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -0.60 Total: -17.53 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.27 Total: -37.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.98 -8.20 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.899 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds