Wall clock time and date at job start Sun Mar 29 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.52886 * 2 1 4 4 C 1.53091 * 109.48929 * 239.90925 * 2 1 3 5 5 C 1.53117 * 109.15707 * 182.39590 * 4 2 1 6 6 C 1.53036 * 109.27831 * 57.65102 * 5 4 2 7 7 N 1.46856 * 109.52317 * 300.82404 * 6 5 4 8 8 C 1.46901 * 110.99833 * 185.84104 * 7 6 5 9 9 C 1.53001 * 109.47540 * 70.39508 * 8 7 6 10 10 C 1.50695 * 109.47150 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00068 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99633 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00181 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47206 * 89.99832 * 14 12 10 16 16 H 1.48507 * 109.47241 * 209.99687 * 14 12 10 17 17 H 1.48506 * 109.47273 * 329.99673 * 14 12 10 18 18 C 1.46838 * 111.19655 * 61.74243 * 7 6 5 19 19 H 1.09003 * 109.46424 * 58.27481 * 18 7 6 20 20 C 1.53005 * 109.45966 * 178.25450 * 18 7 6 21 21 H 1.09004 * 109.47356 * 299.89628 * 1 2 3 22 22 H 1.09000 * 109.47389 * 59.90580 * 1 2 3 23 23 H 1.09000 * 109.46502 * 179.90418 * 1 2 3 24 24 H 1.09003 * 109.53068 * 62.49008 * 4 2 1 25 25 H 1.09002 * 109.57550 * 302.32850 * 4 2 1 26 26 H 1.09004 * 109.50122 * 297.71553 * 5 4 2 27 27 H 1.08995 * 109.53980 * 177.61421 * 5 4 2 28 28 H 1.08999 * 109.46521 * 180.81050 * 6 5 4 29 29 H 1.09002 * 109.46436 * 60.83829 * 6 5 4 30 30 H 1.09000 * 109.46814 * 190.39819 * 8 7 6 31 31 H 1.09003 * 109.47102 * 310.39664 * 8 7 6 32 32 H 1.08999 * 109.46926 * 300.00364 * 9 8 7 33 33 H 1.09003 * 109.46796 * 59.99969 * 9 8 7 34 34 H 0.96995 * 120.00110 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47216 * 53.30330 * 20 18 7 36 36 H 1.09005 * 109.47058 * 173.30456 * 20 18 7 37 37 H 1.09002 * 109.47127 * 293.30257 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7236 -1.2487 5 6 3.5707 -0.7717 -1.2111 6 6 4.0228 -1.4727 0.0720 7 7 3.5093 -0.7419 1.2376 8 6 4.0376 -1.3056 2.4870 9 6 5.5286 -0.9823 2.6022 10 6 6.0704 -1.5601 3.8842 11 1 5.4168 -2.1039 4.5500 12 6 7.4006 -1.3945 4.2072 13 7 8.1966 -0.7326 3.3961 14 14 8.0723 -2.1113 5.7959 15 1 8.5607 -3.4916 5.5485 16 1 9.1941 -1.2692 6.2836 17 1 6.9961 -2.1429 6.8187 18 6 2.0411 -0.7233 1.2481 19 1 1.6649 -1.7464 1.2545 20 6 1.5494 0.0084 2.4986 21 1 -0.3634 0.5122 0.8909 22 1 -0.3634 0.5153 -0.8891 23 1 -0.3632 -1.0277 -0.0017 24 1 1.7150 -0.1868 -2.1397 25 1 1.6449 -1.7389 -1.2700 26 1 3.9673 0.2435 -1.2301 27 1 3.9395 -1.3227 -2.0761 28 1 5.1119 -1.4958 0.1088 29 1 3.6374 -2.4923 0.0839 30 1 3.5055 -0.8731 3.3343 31 1 3.8995 -2.3869 2.4848 32 1 6.0607 -1.4147 1.7549 33 1 5.6668 0.0990 2.6045 34 1 9.1324 -0.6164 3.6230 35 1 2.0202 0.9899 2.5539 36 1 0.4670 0.1270 2.4482 37 1 1.8107 -0.5703 3.3845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252432550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:41 Heat of formation + Delta-G solvation = -41.537788 kcal Electronic energy + Delta-G solvation = -14638.768762 eV Core-core repulsion = 12414.080534 eV Total energy + Delta-G solvation = -2224.688228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48225 -36.24999 -34.65848 -33.98228 -31.42373 -28.90097 -27.03349 -26.52586 -23.91479 -22.19508 -21.44816 -20.50048 -18.56946 -16.72067 -16.43511 -16.30749 -15.59288 -15.53441 -14.89065 -14.52013 -14.30961 -13.79582 -13.48084 -13.27323 -13.06547 -12.91064 -12.76318 -12.63014 -12.47915 -12.34369 -11.89055 -11.78706 -11.54367 -11.37687 -11.32304 -10.97288 -10.83791 -10.52990 -9.12221 -8.20487 -6.32281 1.39066 1.41051 1.52250 2.39694 3.05739 3.12514 3.83336 3.88947 3.96680 4.15597 4.38638 4.42271 4.46385 4.55229 4.60240 4.68739 4.72791 4.86074 4.93577 4.98548 5.02788 5.05327 5.10721 5.15607 5.23584 5.29814 5.35330 5.44662 5.50623 5.59599 5.67408 5.81010 6.14124 6.37283 6.43224 6.85057 7.36832 8.91844 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051913 B = 0.006837 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.238952 B = 4094.176332 C = 4455.069612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.054 3.946 7 N -0.547 5.547 8 C 0.075 3.925 9 C 0.040 3.960 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.082 3.918 19 H 0.030 0.970 20 C -0.147 4.147 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.012 0.988 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 0.077 -7.305 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.074 4.074 7 N -0.272 5.272 8 C -0.053 4.053 9 C 0.002 3.998 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.026 4.026 19 H 0.048 0.952 20 C -0.204 4.204 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.030 0.970 32 H 0.008 0.992 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.506 0.617 -7.361 16.279 hybrid contribution 0.797 -1.137 0.876 1.642 sum -13.710 -0.521 -6.486 15.176 Atomic orbital electron populations 1.21840 0.93106 1.02195 1.02674 1.21174 0.96475 0.99363 0.93100 0.91489 1.21621 0.94253 1.00730 0.98056 1.21567 0.96982 1.00811 0.95552 1.22082 0.99211 0.94728 0.91363 1.61987 1.08269 1.54649 1.02262 1.22054 0.96624 0.95155 0.91427 1.18882 0.91044 0.94920 0.94941 1.21629 0.95194 1.35034 1.06531 0.92304 1.25984 0.97385 0.95510 1.00803 1.70117 1.05758 1.42438 1.38908 0.85413 0.78073 0.78292 0.79046 1.19726 1.20583 1.18662 1.21735 0.86422 0.97586 0.96826 0.95225 1.21981 1.01858 1.00371 0.96196 0.91768 0.91222 0.92523 0.89930 0.91993 0.92200 0.90252 0.93160 0.95698 0.91034 0.97006 0.99220 0.99141 0.92737 0.92903 0.89472 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.88 71.98 0.64 -1.86 16 2 C -0.08 -1.98 2.40 -10.75 -0.03 -2.01 16 3 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 4 C -0.11 -2.46 5.28 30.66 0.16 -2.30 16 5 C -0.11 -3.09 6.09 30.65 0.19 -2.90 16 6 C 0.05 1.95 5.30 86.32 0.46 2.41 16 7 N -0.55 -21.04 4.46 -871.09 -3.88 -24.92 16 8 C 0.07 3.37 4.69 86.30 0.40 3.78 16 9 C 0.04 2.22 5.00 29.85 0.15 2.37 16 10 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 14 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.08 2.48 1.96 44.94 0.09 2.57 16 19 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 20 C -0.15 -4.12 8.42 71.98 0.61 -3.51 16 21 H 0.06 1.08 6.31 -2.38 -0.02 1.06 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.11 6.42 -2.39 -0.02 2.09 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 3.13 5.59 -2.39 -0.01 3.12 16 31 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 32 H -0.01 -0.63 6.59 -2.39 -0.02 -0.65 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.88 6.12 -2.38 -0.01 1.86 16 37 H 0.05 1.39 6.42 -2.39 -0.02 1.38 16 Total: -1.00 -65.88 282.36 2.80 -63.08 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.01 Total: 5.65 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.36 Total: -32.93 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.60 Total: -83.00 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.88 2.80 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.543 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds