Wall clock time and date at job start Sun Mar 29 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.53157 * 2 1 4 4 C 1.53119 * 109.50683 * 120.10199 * 2 1 3 5 5 C 1.53119 * 109.20971 * 177.62830 * 4 2 1 6 6 C 1.53036 * 109.27714 * 302.30866 * 5 4 2 7 7 N 1.46848 * 109.52293 * 59.18579 * 6 5 4 8 8 C 1.46903 * 110.99883 * 174.15526 * 7 6 5 9 9 C 1.52996 * 109.46624 * 176.04443 * 8 7 6 10 10 C 1.50708 * 109.47160 * 174.43710 * 9 8 7 11 11 H 1.08005 * 119.99279 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00478 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99739 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00148 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47435 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47258 * 120.00206 * 14 12 10 17 17 H 1.48505 * 109.47064 * 240.00286 * 14 12 10 18 18 C 1.46844 * 111.19583 * 298.25711 * 7 6 5 19 19 H 1.08997 * 109.46077 * 181.76071 * 18 7 6 20 20 C 1.53001 * 109.46038 * 301.73127 * 18 7 6 21 21 H 1.08998 * 109.46794 * 299.89709 * 1 2 3 22 22 H 1.08996 * 109.47528 * 59.89806 * 1 2 3 23 23 H 1.09001 * 109.46803 * 179.90279 * 1 2 3 24 24 H 1.08993 * 109.52209 * 57.69161 * 4 2 1 25 25 H 1.09001 * 109.52031 * 297.56160 * 4 2 1 26 26 H 1.08993 * 109.50537 * 62.25504 * 5 4 2 27 27 H 1.09000 * 109.49830 * 182.33453 * 5 4 2 28 28 H 1.09011 * 109.45754 * 179.19726 * 6 5 4 29 29 H 1.08993 * 109.46381 * 299.16326 * 6 5 4 30 30 H 1.08994 * 109.47213 * 296.04650 * 8 7 6 31 31 H 1.08996 * 109.46812 * 56.04625 * 8 7 6 32 32 H 1.09004 * 109.47252 * 294.43168 * 9 8 7 33 33 H 1.08996 * 109.47544 * 54.43528 * 9 8 7 34 34 H 0.97007 * 120.00075 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46702 * 65.90412 * 20 18 7 36 36 H 1.08999 * 109.47336 * 185.90206 * 20 18 7 37 37 H 1.08994 * 109.47471 * 305.90904 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7239 1.2486 5 6 3.5713 -0.7719 1.2121 6 6 4.0243 -1.4734 -0.0703 7 7 3.5117 -0.7430 -1.2366 8 6 4.0411 -1.3071 -2.4854 9 6 3.4102 -0.5862 -3.6783 10 6 4.0518 -1.0688 -4.9537 11 1 4.8320 -1.8149 -4.9168 12 6 3.6431 -0.5581 -6.1673 13 7 2.6935 0.3507 -6.2120 14 14 4.4390 -1.1558 -7.7480 15 1 5.4732 -2.1722 -7.4279 16 1 3.4047 -1.7617 -8.6246 17 1 5.0713 -0.0090 -8.4482 18 6 2.0435 -0.7243 -1.2481 19 1 1.6939 -0.2035 -2.1395 20 6 1.5155 -2.1603 -1.2569 21 1 -0.3633 0.5122 0.8909 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0277 -0.0017 24 1 1.6454 -1.7392 1.2688 25 1 1.7148 -0.1877 2.1398 26 1 3.9678 0.2432 1.2312 27 1 3.9388 -1.3225 2.0781 28 1 5.1136 -1.4966 -0.1062 29 1 3.6390 -2.4929 -0.0821 30 1 5.1229 -1.1772 -2.5130 31 1 3.8013 -2.3693 -2.5345 32 1 2.3412 -0.7977 -3.7068 33 1 3.5654 0.4879 -3.5773 34 1 2.4061 0.7104 -7.0658 35 1 1.7766 -2.6491 -0.3181 36 1 0.4316 -2.1483 -1.3711 37 1 1.9624 -2.7067 -2.0874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252432551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:43 Heat of formation + Delta-G solvation = -20.495856 kcal Electronic energy + Delta-G solvation = -14857.270514 eV Core-core repulsion = 12633.494733 eV Total energy + Delta-G solvation = -2223.775782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47392 -34.58769 -32.83266 -32.12251 -29.40032 -27.79605 -25.74419 -24.62382 -22.77328 -21.30904 -20.00798 -17.86334 -16.46942 -15.38563 -15.35120 -14.46438 -14.36793 -13.77284 -13.41121 -12.91624 -12.70023 -12.40045 -12.19817 -11.96456 -11.70923 -11.44254 -11.24236 -10.97715 -10.89880 -10.53285 -10.46918 -10.28254 -10.11854 -9.84234 -9.66804 -9.20982 -9.01671 -8.31471 -7.54366 -5.97709 -3.99574 3.32398 3.39777 3.43927 4.42716 4.59202 4.97546 5.12678 5.16440 5.37539 5.38470 5.63589 5.69885 5.71553 5.84448 5.90226 5.93504 6.01198 6.03130 6.14842 6.16912 6.28331 6.34042 6.38620 6.44163 6.48707 6.61919 6.73232 6.88540 7.01735 7.61447 7.70440 7.88967 7.93826 8.11694 8.46974 9.07596 9.63955 11.13701 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047672 B = 0.007452 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.205681 B = 3756.589192 C = 4076.585581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.051 3.949 7 N -0.533 5.533 8 C 0.062 3.938 9 C 0.025 3.975 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.083 3.917 19 H 0.096 0.904 20 C -0.185 4.185 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -2.596 13.302 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.078 4.078 7 N -0.257 5.257 8 C -0.065 4.065 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.026 4.026 19 H 0.114 0.886 20 C -0.244 4.244 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.201 -2.008 13.212 13.544 hybrid contribution 0.135 -1.167 -1.044 1.571 sum -2.067 -3.175 12.168 12.744 Atomic orbital electron populations 1.21850 0.95539 1.01641 1.01410 1.21185 0.94712 1.00020 0.94385 0.90722 1.21661 0.95723 1.00351 0.97514 1.21555 0.95768 1.01323 0.96591 1.22042 0.99386 0.95235 0.91091 1.62229 1.07128 1.53702 1.02626 1.22307 0.99134 0.96134 0.88910 1.19168 0.95737 0.96259 0.90101 1.21243 1.20258 1.22999 0.91363 0.92781 1.24987 0.95153 0.95089 0.99108 1.69980 1.29113 1.28763 1.25419 0.86554 0.79295 0.78649 0.83605 1.19795 1.21076 1.20988 1.21751 0.87701 0.94682 0.98466 0.88568 1.22498 1.01314 0.99074 1.01512 0.93164 0.92421 0.92703 0.92281 0.92615 0.91417 0.92419 0.91586 0.95269 0.92137 0.96267 0.96367 0.95725 0.93102 0.92943 0.92551 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.84 37.16 0.33 -1.53 16 2 C -0.08 -1.22 2.67 -90.47 -0.24 -1.46 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.11 -1.46 4.97 -26.61 -0.13 -1.59 16 5 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 6 C 0.05 0.79 5.17 -3.83 -0.02 0.77 16 7 N -0.53 -10.01 4.71 -226.61 -1.07 -11.07 16 8 C 0.06 1.34 4.59 -3.82 -0.02 1.33 16 9 C 0.02 0.64 4.26 -27.88 -0.12 0.53 16 10 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 11 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.08 1.45 2.05 -67.65 -0.14 1.31 16 19 H 0.10 1.99 5.97 -51.93 -0.31 1.68 16 20 C -0.19 -3.02 7.71 37.16 0.29 -2.73 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 24 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.00 8.12 -51.92 -0.42 0.58 16 29 H 0.03 0.45 6.32 -51.93 -0.33 0.12 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 32 H 0.02 0.50 6.54 -51.93 -0.34 0.16 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.05 0.77 4.84 -51.92 -0.25 0.52 16 36 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 37 H 0.06 1.11 6.46 -51.93 -0.34 0.78 16 LS Contribution 275.67 15.07 4.15 4.15 Total: -1.00 -29.52 275.67 -8.11 -37.63 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.28 Total: -2.60 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.63 Total: -18.67 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.33 Total: -37.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.52 -8.11 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.134 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds