Wall clock time and date at job start Sun Mar 29 2020 21:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.53157 * 2 1 4 4 C 1.53119 * 109.50683 * 120.10199 * 2 1 3 5 5 C 1.53119 * 109.20971 * 177.62830 * 4 2 1 6 6 C 1.53036 * 109.27714 * 302.30866 * 5 4 2 7 7 N 1.46848 * 109.52293 * 59.18579 * 6 5 4 8 8 C 1.46903 * 110.99883 * 174.15526 * 7 6 5 9 9 C 1.52996 * 109.46624 * 176.04443 * 8 7 6 10 10 C 1.50708 * 109.47160 * 174.43710 * 9 8 7 11 11 H 1.08005 * 119.99279 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00478 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99739 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00148 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47435 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47258 * 120.00206 * 14 12 10 17 17 H 1.48505 * 109.47064 * 240.00286 * 14 12 10 18 18 C 1.46844 * 111.19583 * 298.25711 * 7 6 5 19 19 H 1.08997 * 109.46077 * 181.76071 * 18 7 6 20 20 C 1.53001 * 109.46038 * 301.73127 * 18 7 6 21 21 H 1.08998 * 109.46794 * 299.89709 * 1 2 3 22 22 H 1.08996 * 109.47528 * 59.89806 * 1 2 3 23 23 H 1.09001 * 109.46803 * 179.90279 * 1 2 3 24 24 H 1.08993 * 109.52209 * 57.69161 * 4 2 1 25 25 H 1.09001 * 109.52031 * 297.56160 * 4 2 1 26 26 H 1.08993 * 109.50537 * 62.25504 * 5 4 2 27 27 H 1.09000 * 109.49830 * 182.33453 * 5 4 2 28 28 H 1.09011 * 109.45754 * 179.19726 * 6 5 4 29 29 H 1.08993 * 109.46381 * 299.16326 * 6 5 4 30 30 H 1.08994 * 109.47213 * 296.04650 * 8 7 6 31 31 H 1.08996 * 109.46812 * 56.04625 * 8 7 6 32 32 H 1.09004 * 109.47252 * 294.43168 * 9 8 7 33 33 H 1.08996 * 109.47544 * 54.43528 * 9 8 7 34 34 H 0.97007 * 120.00075 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46702 * 65.90412 * 20 18 7 36 36 H 1.08999 * 109.47336 * 185.90206 * 20 18 7 37 37 H 1.08994 * 109.47471 * 305.90904 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7239 1.2486 5 6 3.5713 -0.7719 1.2121 6 6 4.0243 -1.4734 -0.0703 7 7 3.5117 -0.7430 -1.2366 8 6 4.0411 -1.3071 -2.4854 9 6 3.4102 -0.5862 -3.6783 10 6 4.0518 -1.0688 -4.9537 11 1 4.8320 -1.8149 -4.9168 12 6 3.6431 -0.5581 -6.1673 13 7 2.6935 0.3507 -6.2120 14 14 4.4390 -1.1558 -7.7480 15 1 5.4732 -2.1722 -7.4279 16 1 3.4047 -1.7617 -8.6246 17 1 5.0713 -0.0090 -8.4482 18 6 2.0435 -0.7243 -1.2481 19 1 1.6939 -0.2035 -2.1395 20 6 1.5155 -2.1603 -1.2569 21 1 -0.3633 0.5122 0.8909 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0277 -0.0017 24 1 1.6454 -1.7392 1.2688 25 1 1.7148 -0.1877 2.1398 26 1 3.9678 0.2432 1.2312 27 1 3.9388 -1.3225 2.0781 28 1 5.1136 -1.4966 -0.1062 29 1 3.6390 -2.4929 -0.0821 30 1 5.1229 -1.1772 -2.5130 31 1 3.8013 -2.3693 -2.5345 32 1 2.3412 -0.7977 -3.7068 33 1 3.5654 0.4879 -3.5773 34 1 2.4061 0.7104 -7.0658 35 1 1.7766 -2.6491 -0.3181 36 1 0.4316 -2.1483 -1.3711 37 1 1.9624 -2.7067 -2.0874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252432551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:42 Heat of formation + Delta-G solvation = -38.762729 kcal Electronic energy + Delta-G solvation = -14858.062625 eV Core-core repulsion = 12633.494733 eV Total energy + Delta-G solvation = -2224.567893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81523 -36.22577 -34.69315 -33.45159 -31.22708 -29.18796 -27.02728 -26.42750 -24.35818 -22.54761 -21.69784 -19.17334 -18.59253 -16.83715 -16.78099 -16.51588 -15.68074 -15.01200 -14.86801 -14.48675 -14.24432 -13.82644 -13.57018 -13.37981 -13.13230 -13.04449 -12.78320 -12.58752 -12.46403 -12.31990 -11.96978 -11.60626 -11.55492 -11.29962 -11.24625 -11.03969 -10.80377 -10.53042 -9.04103 -8.21158 -6.32552 1.38627 1.39243 1.52605 2.39304 3.11957 3.12656 3.81276 3.96144 4.04665 4.20255 4.37926 4.48349 4.49570 4.53623 4.60663 4.67176 4.70534 4.84558 4.92274 4.98505 5.00986 5.07166 5.12818 5.16445 5.18003 5.29516 5.39114 5.46206 5.48268 5.62907 5.69783 5.80298 6.15096 6.38348 6.45054 6.84442 7.36502 8.91047 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047672 B = 0.007452 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.205681 B = 3756.589192 C = 4076.585581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.047 3.953 7 N -0.546 5.546 8 C 0.078 3.922 9 C 0.038 3.962 10 C -0.545 4.545 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.080 3.920 19 H 0.051 0.949 20 C -0.176 4.176 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.020 0.980 32 H -0.004 1.004 33 H -0.011 1.011 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -3.676 14.691 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.080 4.080 7 N -0.270 5.270 8 C -0.049 4.049 9 C 0.001 3.999 10 C -0.584 4.584 11 H 0.076 0.924 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.028 4.028 19 H 0.069 0.931 20 C -0.234 4.234 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.014 0.986 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.942 -3.091 14.623 15.071 hybrid contribution 0.033 -0.790 -1.457 1.658 sum -1.909 -3.881 13.165 13.858 Atomic orbital electron populations 1.21825 0.94014 1.02318 1.01892 1.21159 0.95973 0.99032 0.93831 0.92133 1.21653 0.95270 1.00786 0.96999 1.21559 0.96157 1.01075 0.95964 1.22186 0.99614 0.95478 0.90735 1.62179 1.08013 1.54366 1.02422 1.21942 0.98495 0.95489 0.89009 1.18939 0.94687 0.94387 0.91918 1.21668 1.20669 1.23380 0.92647 0.92357 1.25962 0.95589 0.95037 1.03061 1.70117 1.30439 1.29879 1.26629 0.85378 0.78518 0.78399 0.78617 1.18629 1.20247 1.20259 1.21715 0.87110 0.95541 0.98476 0.93064 1.22402 1.01778 0.97780 1.01489 0.90778 0.93899 0.91885 0.91399 0.90141 0.92048 0.89405 0.91302 0.94716 0.92395 0.96182 0.98565 0.99304 0.92764 0.90666 0.91405 0.94808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.84 71.98 0.64 -2.76 16 2 C -0.08 -2.27 2.67 -10.70 -0.03 -2.29 16 3 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -2.41 4.97 30.67 0.15 -2.26 16 5 C -0.11 -2.54 6.09 30.65 0.19 -2.36 16 6 C 0.05 1.40 5.17 86.33 0.45 1.84 16 7 N -0.55 -20.74 4.71 -870.87 -4.10 -24.84 16 8 C 0.08 3.50 4.59 86.30 0.40 3.90 16 9 C 0.04 2.10 4.26 29.85 0.13 2.23 16 10 C -0.55 -32.12 9.11 25.60 0.23 -31.88 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.08 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 14 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 C 0.08 2.87 2.05 44.98 0.09 2.96 16 19 H 0.05 2.27 5.97 -2.39 -0.01 2.26 16 20 C -0.18 -5.65 7.71 71.98 0.56 -5.10 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.39 6.55 -2.39 -0.02 1.38 16 24 H 0.07 1.41 6.43 -2.39 -0.02 1.39 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 29 H 0.03 0.99 6.32 -2.39 -0.02 0.98 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 31 H 0.02 0.89 6.74 -2.39 -0.02 0.87 16 32 H 0.00 -0.23 6.54 -2.39 -0.02 -0.25 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.07 2.05 4.84 -2.38 -0.01 2.04 16 36 H 0.07 1.99 6.75 -2.39 -0.02 1.97 16 37 H 0.03 1.25 6.46 -2.39 -0.02 1.23 16 Total: -1.00 -65.30 275.67 2.48 -62.81 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.02 Total: 7.58 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 3.26 Total: -35.17 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.82 Total: -82.43 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.30 2.48 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.052 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds