Wall clock time and date at job start Sun Mar 29 2020 21:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 H 1.09005 * 109.47649 * 323.45679 * 3 2 1 5 5 C 1.50698 * 109.47431 * 203.45421 * 3 2 1 6 6 H 1.08000 * 120.00073 * 245.92813 * 5 3 2 7 7 C 1.37873 * 120.00093 * 65.92887 * 5 3 2 8 8 N 1.31516 * 120.00492 * 190.76359 * 7 5 3 9 9 Si 1.86798 * 120.00046 * 10.77043 * 7 5 3 10 10 H 1.48493 * 109.47479 * 94.31035 * 9 7 5 11 11 H 1.48497 * 109.47363 * 214.31111 * 9 7 5 12 12 H 1.48503 * 109.47006 * 334.30853 * 9 7 5 13 13 N 1.46903 * 109.47096 * 83.45074 * 3 2 1 14 14 C 1.46845 * 110.99653 * 56.94698 * 13 3 2 15 15 C 1.53041 * 109.52440 * 174.15808 * 14 13 3 16 16 C 1.53122 * 109.27677 * 59.18093 * 15 14 13 17 17 C 1.53124 * 109.16025 * 302.34551 * 16 15 14 18 18 C 1.46841 * 111.00337 * 292.73512 * 13 3 2 19 19 H 1.09001 * 109.45912 * 65.82084 * 18 13 3 20 20 C 1.53001 * 109.46419 * 305.85612 * 18 13 3 21 21 H 1.08995 * 109.47709 * 167.50361 * 1 2 3 22 22 H 1.08999 * 109.46982 * 287.50841 * 1 2 3 23 23 H 1.09005 * 109.47080 * 47.50283 * 1 2 3 24 24 H 1.09002 * 109.47555 * 120.00092 * 2 1 3 25 25 H 1.09001 * 109.46908 * 240.00145 * 2 1 3 26 26 H 0.96999 * 120.00316 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46680 * 294.17405 * 14 13 3 28 28 H 1.09006 * 109.46136 * 54.15594 * 14 13 3 29 29 H 1.08994 * 109.50354 * 179.11924 * 15 14 13 30 30 H 1.09002 * 109.50487 * 299.23919 * 15 14 13 31 31 H 1.09002 * 109.52342 * 62.24642 * 16 15 14 32 32 H 1.08992 * 109.52253 * 182.44320 * 16 15 14 33 33 H 1.08994 * 109.50505 * 177.59284 * 17 16 15 34 34 H 1.09000 * 109.50598 * 297.67959 * 17 16 15 35 35 H 1.09000 * 109.46972 * 64.94558 * 20 18 13 36 36 H 1.09002 * 109.47150 * 184.94513 * 20 18 13 37 37 H 1.08999 * 109.46697 * 304.94676 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3828 2.0603 -0.6119 5 6 3.4363 1.4816 -0.5655 6 1 4.2670 1.7603 0.0659 7 6 3.6534 1.1616 -1.8889 8 7 4.8798 0.9885 -2.3311 9 14 2.2054 0.9741 -3.0541 10 1 1.9659 2.2600 -3.7570 11 1 2.5053 -0.0860 -4.0498 12 1 0.9938 0.5991 -2.2816 13 7 2.0543 1.9568 1.3760 14 6 2.8739 1.1052 2.2475 15 6 2.9851 1.7474 3.6322 16 6 1.5834 1.9170 4.2248 17 6 0.7355 2.7673 3.2746 18 6 0.6897 2.0956 1.9002 19 1 0.2343 1.1096 1.9929 20 6 -0.1400 2.9521 0.9416 21 1 -0.3634 -1.0032 -0.2223 22 1 -0.3633 0.3092 0.9801 23 1 -0.3633 0.6943 -0.7577 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 5.0325 0.7638 -3.2623 27 1 2.4083 0.1240 2.3386 28 1 3.8694 0.9963 1.8169 29 1 3.5804 1.1074 4.2834 30 1 3.4632 2.7229 3.5436 31 1 1.1198 0.9384 4.3496 32 1 1.6546 2.4135 5.1924 33 1 -0.2762 2.8559 3.6702 34 1 1.1779 3.7590 3.1808 35 1 -0.2473 2.4318 -0.0102 36 1 -1.1256 3.1285 1.3724 37 1 0.3619 3.9060 0.7797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252433756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:32 Heat of formation + Delta-G solvation = 1.895195 kcal Electronic energy + Delta-G solvation = -15494.951009 eV Core-core repulsion = 13272.146176 eV Total energy + Delta-G solvation = -2222.804833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18714 -34.83724 -32.42558 -31.67419 -30.60769 -27.50858 -26.25948 -23.53507 -22.42576 -21.03820 -19.96080 -18.60659 -16.69997 -15.63563 -14.71179 -14.49034 -13.93729 -13.73252 -13.21983 -12.95795 -12.74286 -12.34214 -11.91167 -11.71721 -11.46439 -11.39249 -11.24635 -10.96091 -10.68323 -10.55502 -10.48416 -10.20211 -9.95294 -9.75676 -9.48408 -9.25220 -8.96592 -8.37325 -7.11611 -6.02851 -3.97572 3.31242 3.41107 3.43838 4.46996 4.80728 5.21914 5.26365 5.28516 5.36964 5.62909 5.71762 5.89246 5.91647 5.96890 6.02854 6.05618 6.12343 6.14763 6.31623 6.35438 6.35821 6.51744 6.57235 6.58762 6.67708 6.75073 6.84112 6.88294 6.95380 7.08109 7.38349 7.72390 8.09316 8.26509 8.74858 9.07150 9.62046 11.09938 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.012111 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.551277 B = 2311.440857 C = 2679.797600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.043 0.957 5 C -0.503 4.503 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.515 5.515 14 C 0.059 3.941 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.110 4.110 18 C 0.067 3.933 19 H 0.045 0.955 20 C -0.150 4.150 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 0.551 9.012 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.197 4.197 3 C 0.079 3.921 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.170 1.170 13 N -0.239 5.239 14 C -0.069 4.069 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.042 4.042 19 H 0.063 0.937 20 C -0.207 4.207 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.771 0.980 8.841 12.492 hybrid contribution -1.011 -0.989 -0.849 1.650 sum -9.783 -0.010 7.992 12.632 Atomic orbital electron populations 1.22386 0.98465 1.00057 1.01206 1.22657 0.93237 1.02312 1.01534 1.19797 0.97711 0.88828 0.85743 0.93975 1.20972 0.91914 1.45517 0.95683 0.90319 1.24876 0.95245 0.94727 0.98090 1.69932 1.19920 1.48119 1.15755 0.87296 0.85112 0.77879 0.81345 1.20841 1.21672 1.16960 1.62125 1.08773 1.50109 1.02886 1.22028 0.99701 0.93313 0.91809 1.21628 0.96053 1.01413 0.96458 1.21559 0.96616 0.99473 0.97927 1.21627 0.98645 0.99754 0.94792 1.21864 0.91030 0.97531 0.93733 0.93716 1.21999 0.98133 1.00869 0.99747 0.94621 0.92355 0.93013 0.92743 0.92190 0.92837 0.95831 0.89433 0.92614 0.91506 0.92919 0.92792 0.92792 0.91511 0.91933 0.93518 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 7.99 37.16 0.30 -2.69 16 2 C -0.16 -3.39 4.24 -26.74 -0.11 -3.50 16 3 C 0.19 4.31 1.30 -68.87 -0.09 4.22 16 4 H 0.04 1.01 4.31 -51.93 -0.22 0.78 16 5 C -0.50 -13.91 8.44 -34.44 -0.29 -14.20 16 6 H 0.08 2.39 6.94 -52.49 -0.36 2.03 16 7 C 0.07 2.05 5.25 -17.82 -0.09 1.96 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.86 21.00 25.71 -169.99 -4.37 16.63 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.25 -5.55 4.22 56.52 0.24 -5.32 16 13 N -0.51 -10.56 4.45 -220.14 -0.98 -11.54 16 14 C 0.06 1.15 4.72 -3.83 -0.02 1.13 16 15 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 16 C -0.12 -1.65 6.00 -26.60 -0.16 -1.81 16 17 C -0.11 -1.62 5.37 -26.65 -0.14 -1.76 16 18 C 0.07 1.14 1.76 -67.72 -0.12 1.03 16 19 H 0.05 0.78 4.83 -51.93 -0.25 0.53 16 20 C -0.15 -2.45 8.18 37.16 0.30 -2.14 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.97 4.65 -51.93 -0.24 0.73 16 23 H 0.05 0.95 5.69 -51.93 -0.30 0.66 16 24 H 0.05 1.14 5.49 -51.93 -0.29 0.86 16 25 H 0.06 1.39 5.41 -51.93 -0.28 1.11 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.45 6.13 -51.93 -0.32 0.13 16 28 H 0.09 1.92 6.39 -51.93 -0.33 1.59 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.09 4.32 -51.93 -0.22 0.86 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -29.01 257.66 -7.20 -36.21 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.92 Total: 1.21 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.59 Total: -19.78 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.21 Total: -38.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.37 Total: 16.63 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.01 -7.20 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252433756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.108 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds