Wall clock time and date at job start Sun Mar 29 2020 21:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 H 1.09005 * 109.47649 * 323.45679 * 3 2 1 5 5 C 1.50698 * 109.47431 * 203.45421 * 3 2 1 6 6 H 1.08000 * 120.00073 * 245.92813 * 5 3 2 7 7 C 1.37873 * 120.00093 * 65.92887 * 5 3 2 8 8 N 1.31516 * 120.00492 * 190.76359 * 7 5 3 9 9 Si 1.86798 * 120.00046 * 10.77043 * 7 5 3 10 10 H 1.48493 * 109.47479 * 94.31035 * 9 7 5 11 11 H 1.48497 * 109.47363 * 214.31111 * 9 7 5 12 12 H 1.48503 * 109.47006 * 334.30853 * 9 7 5 13 13 N 1.46903 * 109.47096 * 83.45074 * 3 2 1 14 14 C 1.46845 * 110.99653 * 56.94698 * 13 3 2 15 15 C 1.53041 * 109.52440 * 174.15808 * 14 13 3 16 16 C 1.53122 * 109.27677 * 59.18093 * 15 14 13 17 17 C 1.53124 * 109.16025 * 302.34551 * 16 15 14 18 18 C 1.46841 * 111.00337 * 292.73512 * 13 3 2 19 19 H 1.09001 * 109.45912 * 65.82084 * 18 13 3 20 20 C 1.53001 * 109.46419 * 305.85612 * 18 13 3 21 21 H 1.08995 * 109.47709 * 167.50361 * 1 2 3 22 22 H 1.08999 * 109.46982 * 287.50841 * 1 2 3 23 23 H 1.09005 * 109.47080 * 47.50283 * 1 2 3 24 24 H 1.09002 * 109.47555 * 120.00092 * 2 1 3 25 25 H 1.09001 * 109.46908 * 240.00145 * 2 1 3 26 26 H 0.96999 * 120.00316 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46680 * 294.17405 * 14 13 3 28 28 H 1.09006 * 109.46136 * 54.15594 * 14 13 3 29 29 H 1.08994 * 109.50354 * 179.11924 * 15 14 13 30 30 H 1.09002 * 109.50487 * 299.23919 * 15 14 13 31 31 H 1.09002 * 109.52342 * 62.24642 * 16 15 14 32 32 H 1.08992 * 109.52253 * 182.44320 * 16 15 14 33 33 H 1.08994 * 109.50505 * 177.59284 * 17 16 15 34 34 H 1.09000 * 109.50598 * 297.67959 * 17 16 15 35 35 H 1.09000 * 109.46972 * 64.94558 * 20 18 13 36 36 H 1.09002 * 109.47150 * 184.94513 * 20 18 13 37 37 H 1.08999 * 109.46697 * 304.94676 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3828 2.0603 -0.6119 5 6 3.4363 1.4816 -0.5655 6 1 4.2670 1.7603 0.0659 7 6 3.6534 1.1616 -1.8889 8 7 4.8798 0.9885 -2.3311 9 14 2.2054 0.9741 -3.0541 10 1 1.9659 2.2600 -3.7570 11 1 2.5053 -0.0860 -4.0498 12 1 0.9938 0.5991 -2.2816 13 7 2.0543 1.9568 1.3760 14 6 2.8739 1.1052 2.2475 15 6 2.9851 1.7474 3.6322 16 6 1.5834 1.9170 4.2248 17 6 0.7355 2.7673 3.2746 18 6 0.6897 2.0956 1.9002 19 1 0.2343 1.1096 1.9929 20 6 -0.1400 2.9521 0.9416 21 1 -0.3634 -1.0032 -0.2223 22 1 -0.3633 0.3092 0.9801 23 1 -0.3633 0.6943 -0.7577 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 5.0325 0.7638 -3.2623 27 1 2.4083 0.1240 2.3386 28 1 3.8694 0.9963 1.8169 29 1 3.5804 1.1074 4.2834 30 1 3.4632 2.7229 3.5436 31 1 1.1198 0.9384 4.3496 32 1 1.6546 2.4135 5.1924 33 1 -0.2762 2.8559 3.6702 34 1 1.1779 3.7590 3.1808 35 1 -0.2473 2.4318 -0.0102 36 1 -1.1256 3.1285 1.3724 37 1 0.3619 3.9060 0.7797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252433756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:31 Heat of formation + Delta-G solvation = -17.497924 kcal Electronic energy + Delta-G solvation = -15495.791958 eV Core-core repulsion = 13272.146176 eV Total energy + Delta-G solvation = -2223.645782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68790 -36.38947 -34.28847 -33.26628 -32.08892 -29.25996 -27.70002 -25.13360 -24.08698 -22.43976 -21.45844 -20.12410 -18.72203 -17.33412 -16.37420 -16.00479 -15.38185 -15.23980 -14.73597 -14.59790 -14.39478 -13.84723 -13.44445 -13.22059 -13.01235 -12.84550 -12.61372 -12.57009 -12.39987 -12.17332 -12.08704 -11.55551 -11.38105 -11.35217 -11.21558 -10.93098 -10.69430 -10.49800 -8.70736 -8.24720 -6.23665 1.34777 1.38469 1.48847 2.38606 3.09223 3.33260 3.97713 4.04831 4.12572 4.26961 4.29911 4.42454 4.53443 4.54796 4.61238 4.72123 4.82036 4.90401 4.99978 5.05131 5.10500 5.14671 5.17164 5.18272 5.24619 5.30702 5.39505 5.43767 5.47079 5.58440 5.69439 5.75902 6.15995 6.58809 6.82244 6.89304 7.40435 8.91755 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.012111 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.551277 B = 2311.440857 C = 2679.797600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.042 0.958 5 C -0.504 4.504 6 H 0.032 0.968 7 C 0.012 3.988 8 N -0.951 5.951 9 Si 0.922 3.078 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.214 1.214 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.107 4.107 18 C 0.063 3.937 19 H 0.052 0.948 20 C -0.149 4.149 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 0.459 10.404 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.085 3.915 4 H 0.060 0.940 5 C -0.542 4.542 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.592 5.592 9 Si 0.746 3.254 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.136 1.136 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.145 4.145 18 C -0.045 4.045 19 H 0.069 0.931 20 C -0.206 4.206 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.162 0.894 10.265 15.940 hybrid contribution 0.146 -0.929 -1.194 1.520 sum -12.016 -0.034 9.071 15.055 Atomic orbital electron populations 1.22301 0.95169 1.01414 1.02479 1.22508 0.96095 1.00413 1.00504 1.19574 0.94416 0.90159 0.87383 0.94049 1.21276 0.93371 1.44188 0.95371 0.95003 1.25746 0.98039 0.94657 0.99989 1.70095 1.22589 1.50334 1.16179 0.86253 0.82627 0.77627 0.78879 1.20731 1.21926 1.13585 1.62046 1.11495 1.50213 1.01963 1.21942 0.97284 0.93929 0.93408 1.21590 0.98240 1.00705 0.94536 1.21546 0.94573 1.00236 0.98679 1.21636 1.00540 0.98987 0.93354 1.22038 0.88764 0.98368 0.95322 0.93091 1.22001 0.99601 0.99787 0.99248 0.92705 0.90462 0.92930 0.92842 0.94356 0.92906 0.95553 0.93836 0.90930 0.92682 0.91949 0.90217 0.89688 0.92388 0.93123 0.90121 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 7.99 71.98 0.58 -4.56 16 2 C -0.16 -6.48 4.24 30.59 0.13 -6.35 16 3 C 0.19 8.89 1.30 44.17 0.06 8.95 16 4 H 0.04 1.93 4.31 -2.38 -0.01 1.92 16 5 C -0.50 -29.09 8.44 25.60 0.22 -28.88 16 6 H 0.03 2.08 6.94 -2.91 -0.02 2.06 16 7 C 0.01 0.72 5.25 84.65 0.44 1.16 16 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 9 Si 0.92 43.89 25.71 68.60 1.76 45.65 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.21 -8.95 4.22 99.48 0.42 -8.53 16 13 N -0.53 -21.63 4.45 -850.39 -3.79 -25.41 16 14 C 0.06 2.43 4.72 86.33 0.41 2.84 16 15 C -0.11 -3.42 6.09 30.65 0.19 -3.23 16 16 C -0.11 -2.73 6.00 30.68 0.18 -2.55 16 17 C -0.11 -2.74 5.37 30.65 0.16 -2.58 16 18 C 0.06 1.97 1.76 44.94 0.08 2.05 16 19 H 0.05 1.56 4.83 -2.39 -0.01 1.55 16 20 C -0.15 -4.38 8.18 71.98 0.59 -3.79 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.08 2.24 4.65 -2.39 -0.01 2.23 16 23 H 0.05 1.72 5.69 -2.38 -0.01 1.71 16 24 H 0.05 2.20 5.49 -2.39 -0.01 2.19 16 25 H 0.04 1.74 5.41 -2.39 -0.01 1.72 16 26 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.03 1.00 6.13 -2.39 -0.01 0.98 16 28 H 0.04 2.04 6.39 -2.38 -0.02 2.02 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.60 4.32 -2.39 -0.01 1.59 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.75 257.66 2.07 -63.68 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.76 Total: 13.35 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 3.03 Total: -36.93 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -3.49 Total: -85.75 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.76 Total: 45.65 kcal Total: -65.75 2.07 -63.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252433756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.184 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds