Wall clock time and date at job start Sun Mar 29 2020 21:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47106 * 55.00423 * 3 2 1 5 5 C 1.50694 * 109.47355 * 175.00473 * 3 2 1 6 6 H 1.08000 * 120.00563 * 120.00152 * 5 3 2 7 7 C 1.37885 * 119.99902 * 299.99988 * 5 3 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 3 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 N 1.46903 * 109.47096 * 295.00530 * 3 2 1 14 14 C 1.46847 * 111.00026 * 299.20593 * 13 3 2 15 15 C 1.53030 * 109.52138 * 174.15968 * 14 13 3 16 16 C 1.53122 * 109.27975 * 59.18371 * 15 14 13 17 17 C 1.53113 * 109.15653 * 302.34022 * 16 15 14 18 18 C 1.46848 * 110.99873 * 174.99488 * 13 3 2 19 19 H 1.09003 * 109.45995 * 65.83824 * 18 13 3 20 20 C 1.52995 * 109.46621 * 305.85930 * 18 13 3 21 21 H 1.08997 * 109.47578 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.46804 * 299.99684 * 1 2 3 23 23 H 1.09002 * 109.47653 * 59.99255 * 1 2 3 24 24 H 1.09002 * 109.46939 * 240.00609 * 2 1 3 25 25 H 1.09001 * 109.47644 * 120.00188 * 2 1 3 26 26 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.46627 * 294.17867 * 14 13 3 28 28 H 1.09005 * 109.45847 * 54.14639 * 14 13 3 29 29 H 1.08996 * 109.50636 * 299.23801 * 15 14 13 30 30 H 1.09006 * 109.49942 * 179.12443 * 15 14 13 31 31 H 1.09001 * 109.52357 * 182.43833 * 16 15 14 32 32 H 1.08998 * 109.57628 * 62.28046 * 16 15 14 33 33 H 1.08991 * 109.50978 * 297.71215 * 17 16 15 34 34 H 1.09008 * 109.53433 * 177.60967 * 17 16 15 35 35 H 1.08994 * 109.47477 * 59.99520 * 20 18 13 36 36 H 1.09000 * 109.47321 * 180.02562 * 20 18 13 37 37 H 1.09010 * 109.46773 * 299.99723 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0054 0.8736 1.3775 10 1 6.4488 2.1063 2.0769 11 1 6.4366 -0.3175 2.1524 12 1 6.6107 0.8284 0.0223 13 7 1.6513 2.0993 -1.2552 14 6 2.2354 1.4099 -2.4128 15 6 1.6946 2.0294 -3.7033 16 6 2.0523 3.5178 -3.7383 17 6 1.4734 4.2030 -2.4975 18 6 2.0206 3.5205 -1.2417 19 1 3.1065 3.6134 -1.2220 20 6 1.4292 4.1892 0.0008 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.8294 -0.0614 2.9497 27 1 3.3202 1.5126 -2.3874 28 1 1.9699 0.3532 -2.3780 29 1 0.6111 1.9146 -3.7359 30 1 2.1402 1.5276 -4.5624 31 1 1.6317 3.9726 -4.6352 32 1 3.1362 3.6328 -3.7456 33 1 0.3865 4.1226 -2.5110 34 1 1.7605 5.2546 -2.4944 35 1 1.8195 3.7038 0.8953 36 1 1.7028 5.2442 0.0107 37 1 0.3432 4.0961 -0.0186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252433757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:33 Heat of formation + Delta-G solvation = -31.522569 kcal Electronic energy + Delta-G solvation = -15386.734400 eV Core-core repulsion = 13162.480464 eV Total energy + Delta-G solvation = -2224.253936 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25231 -36.34389 -33.82117 -33.46883 -31.86045 -28.53724 -27.62578 -25.36110 -24.15759 -22.17733 -21.09497 -20.38977 -18.05848 -17.17230 -16.31273 -15.87182 -15.17698 -15.03066 -14.84482 -14.56335 -14.36638 -13.46976 -13.22915 -13.07682 -13.00307 -12.69175 -12.65049 -12.63280 -12.41659 -12.06675 -11.75608 -11.62388 -11.52511 -11.45160 -11.13597 -10.88028 -10.64947 -10.32250 -8.83132 -7.99547 -6.22305 1.34117 1.36493 1.44672 2.39790 3.16735 3.45727 4.07962 4.10953 4.18342 4.41218 4.58890 4.63673 4.70431 4.76157 4.80319 4.87959 4.93082 4.95727 5.11368 5.16775 5.17156 5.23001 5.31978 5.40186 5.40803 5.45153 5.48357 5.56952 5.61114 5.70504 5.86253 6.13240 6.29345 6.47327 6.81694 7.01684 7.47969 8.93462 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.012094 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.096191 B = 2314.650218 C = 2609.879981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.019 0.981 5 C -0.544 4.544 6 H 0.042 0.958 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.103 4.103 18 C 0.084 3.916 19 H 0.009 0.991 20 C -0.134 4.134 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.006 0.994 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 4.825 -8.817 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.037 0.963 5 C -0.584 4.584 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.248 5.248 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.025 4.025 19 H 0.028 0.972 20 C -0.192 4.192 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.454 4.704 -8.686 10.835 hybrid contribution 2.245 -0.269 0.766 2.387 sum -2.209 4.435 -7.920 9.342 Atomic orbital electron populations 1.21553 0.96251 0.99678 1.00685 1.21505 0.94570 0.98635 1.00156 1.19127 0.91401 0.91272 0.87375 0.96322 1.21953 0.94452 1.37129 1.04820 0.94025 1.25554 1.01345 0.95151 0.95711 1.69994 1.35995 1.39192 1.09786 0.85839 0.82090 0.77556 0.77835 1.20431 1.20768 1.20062 1.62401 1.57816 1.01586 1.03034 1.21933 0.95531 0.98074 0.91237 1.21582 1.01426 0.95906 0.95782 1.21545 0.99940 0.95521 0.98290 1.21603 1.00907 0.98626 0.92970 1.21455 0.95991 0.89170 0.95856 0.97249 1.21754 1.00777 0.99520 0.97117 0.93720 0.94865 0.92400 0.95160 0.92118 0.93044 0.97599 0.92265 0.91160 0.90946 0.89840 0.93555 0.91126 0.90840 0.94796 0.91516 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.32 16 2 C -0.11 -5.32 5.06 30.59 0.15 -5.17 16 3 C 0.22 10.75 1.35 44.17 0.06 10.81 16 4 H 0.02 1.05 5.92 -2.39 -0.01 1.03 16 5 C -0.54 -29.83 7.19 25.60 0.18 -29.65 16 6 H 0.04 2.34 5.84 -2.91 -0.02 2.32 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.36 11.29 21.45 0.24 -52.12 16 9 Si 0.94 44.31 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.52 -22.01 3.93 -850.40 -3.34 -25.35 16 14 C 0.06 2.38 4.80 86.32 0.41 2.80 16 15 C -0.11 -3.23 6.09 30.65 0.19 -3.04 16 16 C -0.12 -3.13 6.00 30.67 0.18 -2.95 16 17 C -0.10 -3.03 5.37 30.65 0.16 -2.86 16 18 C 0.08 3.24 2.10 44.94 0.09 3.33 16 19 H 0.01 0.42 6.96 -2.39 -0.02 0.40 16 20 C -0.13 -4.98 8.78 71.98 0.63 -4.35 16 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.03 1.44 6.05 -2.39 -0.01 1.42 16 25 H 0.06 3.32 5.95 -2.39 -0.01 3.30 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 27 H 0.01 0.26 6.63 -2.39 -0.02 0.24 16 28 H 0.06 2.40 5.93 -2.38 -0.01 2.39 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.03 1.49 6.22 -2.39 -0.01 1.47 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -58.61 274.91 3.17 -55.44 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.02 Total: 9.43 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.23 Total: -33.74 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.10 Total: -77.47 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -58.61 3.17 -55.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252433757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.920 kcal (2) G-P(sol) polarization free energy of solvation -58.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds