Wall clock time and date at job start Sun Mar 29 2020 21:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.57432 * 2 1 4 4 C 1.53124 * 109.52440 * 239.84267 * 2 1 3 5 5 C 1.53032 * 109.27817 * 182.43991 * 4 2 1 6 6 N 1.46847 * 109.52682 * 59.17958 * 5 4 2 7 7 C 1.46899 * 111.00044 * 174.15899 * 6 5 4 8 8 C 1.52997 * 109.47254 * 66.04569 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46756 * 59.99920 * 13 11 9 15 15 H 1.48490 * 109.47381 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47117 * 300.00527 * 13 11 9 17 17 C 1.46842 * 111.19604 * 298.25798 * 6 5 4 18 18 C 1.53035 * 109.52655 * 61.73774 * 17 6 5 19 19 H 1.09005 * 109.49923 * 60.76046 * 18 17 6 20 20 C 1.53003 * 109.53778 * 180.85759 * 18 17 6 21 21 H 1.09009 * 109.47050 * 180.15690 * 1 2 3 22 22 H 1.09004 * 109.47397 * 300.15572 * 1 2 3 23 23 H 1.08999 * 109.47585 * 60.16138 * 1 2 3 24 24 H 1.08997 * 109.49990 * 62.49690 * 4 2 1 25 25 H 1.08997 * 109.53124 * 302.39988 * 4 2 1 26 26 H 1.09003 * 109.46697 * 299.15746 * 5 4 2 27 27 H 1.09005 * 109.45482 * 179.19115 * 5 4 2 28 28 H 1.09002 * 109.47043 * 186.04640 * 7 6 5 29 29 H 1.09001 * 109.47354 * 306.04701 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 32 32 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.46292 * 181.75922 * 17 6 5 34 34 H 1.09008 * 109.46217 * 301.72586 * 17 6 5 35 35 H 1.08995 * 109.46937 * 179.82342 * 20 18 17 36 36 H 1.08996 * 109.47118 * 299.82898 * 20 18 17 37 37 H 1.09003 * 109.46897 * 59.82584 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2479 5 6 3.5708 -0.7751 -1.2117 6 7 4.0103 -1.4789 0.0000 7 6 5.4671 -1.6677 -0.0001 8 6 6.1578 -0.3061 0.0990 9 6 7.6523 -0.4998 0.0996 10 1 8.0679 -1.4946 0.0352 11 6 8.4891 0.5929 0.1812 12 7 7.9830 1.8043 0.2591 13 14 10.3416 0.3527 0.1826 14 1 10.7542 -0.3220 -1.0743 15 1 11.0121 1.6743 0.2775 16 1 10.7312 -0.4852 1.3451 17 6 3.5708 -0.7752 1.2115 18 6 2.0417 -0.7250 1.2478 19 1 1.6447 -1.7400 1.2674 20 6 1.5839 0.0268 2.4992 21 1 -0.3634 -1.0277 0.0028 22 1 -0.3634 0.5163 0.8886 23 1 -0.3634 0.5113 -0.8914 24 1 1.7161 -0.1890 -2.1393 25 1 1.6447 -1.7399 -1.2681 26 1 3.9674 0.2402 -1.2061 27 1 3.9376 -1.3034 -2.0917 28 1 5.7536 -2.2834 0.8524 29 1 5.7694 -2.1621 -0.9233 30 1 5.8713 0.3096 -0.7535 31 1 5.8556 0.1884 1.0222 32 1 8.5718 2.5731 0.3161 33 1 3.9379 -1.3033 2.0916 34 1 3.9674 0.2402 1.2059 35 1 0.4949 0.0646 2.5223 36 1 1.9485 -0.4897 3.3871 37 1 1.9824 1.0413 2.4798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252727643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:11 Heat of formation + Delta-G solvation = -29.318015 kcal Electronic energy + Delta-G solvation = -14651.317718 eV Core-core repulsion = 12427.159379 eV Total energy + Delta-G solvation = -2224.158339 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.09303 -35.27054 -32.78585 -31.85983 -29.72260 -27.50485 -26.07884 -24.00230 -22.18210 -21.68618 -20.06566 -18.88154 -16.39730 -14.87616 -14.84313 -14.48001 -14.33193 -14.11368 -13.71114 -12.94288 -12.64116 -12.30515 -12.20966 -11.86529 -11.60631 -11.45034 -11.33842 -11.15422 -10.86183 -10.70232 -10.64596 -10.30268 -9.88865 -9.81394 -9.75331 -9.64393 -9.12027 -8.34182 -7.41165 -6.00749 -4.03629 3.32803 3.37011 3.39694 4.44109 4.63139 4.95149 5.02943 5.10166 5.34479 5.40154 5.63841 5.72527 5.76395 5.80755 5.88363 5.92070 6.00268 6.06809 6.19226 6.22498 6.26167 6.33852 6.44354 6.49852 6.52041 6.56399 6.70701 6.80059 6.96777 7.59180 7.61603 7.74697 7.92296 8.01700 8.43807 9.03468 9.60388 11.10299 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050499 B = 0.006775 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.333944 B = 4132.020839 C = 4257.065731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.109 4.109 5 C 0.053 3.947 6 N -0.542 5.542 7 C 0.057 3.943 8 C -0.009 4.009 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.059 3.941 18 C -0.083 4.083 19 H 0.072 0.928 20 C -0.147 4.147 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 -3.440 0.344 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.076 4.076 6 N -0.266 5.266 7 C -0.070 4.070 8 C -0.047 4.047 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.069 4.069 18 C -0.101 4.101 19 H 0.090 0.910 20 C -0.205 4.205 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.222 -3.728 0.352 13.743 hybrid contribution 1.561 0.844 -0.005 1.774 sum -11.662 -2.884 0.348 12.018 Atomic orbital electron populations 1.21856 0.95727 1.01430 1.01185 1.21206 0.94935 0.99513 0.95157 0.91538 1.21636 0.95723 1.00447 0.96866 1.22023 0.94328 0.97788 0.93424 1.62303 1.14432 1.48387 1.01454 1.22306 0.84143 0.99667 1.00895 1.19659 0.95495 0.92295 0.97258 1.21145 0.91465 0.92803 1.50443 0.92672 1.25027 0.98855 0.95256 0.95258 1.69962 1.35102 0.97921 1.50529 0.86647 0.85461 0.77200 0.78640 1.20225 1.21312 1.20208 1.22074 0.93620 0.97953 0.93294 1.21189 0.95696 0.99316 0.93940 0.91006 1.21845 1.00619 1.00540 0.97485 0.92920 0.92724 0.93160 0.92255 0.91705 0.94174 0.91463 0.92094 0.92165 0.96580 0.96354 0.92986 0.91459 0.93892 0.92706 0.92822 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.90 37.15 0.33 -1.26 16 2 C -0.09 -1.21 2.29 -90.50 -0.21 -1.42 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.54 5.38 -26.65 -0.14 -1.69 16 5 C 0.05 0.93 5.05 -3.84 -0.02 0.91 16 6 N -0.54 -10.23 4.86 -234.67 -1.14 -11.37 16 7 C 0.06 1.23 5.30 -3.83 -0.02 1.21 16 8 C -0.01 -0.23 4.27 -27.89 -0.12 -0.35 16 9 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.06 1.05 4.12 -3.84 -0.02 1.03 16 18 C -0.08 -1.18 2.38 -90.54 -0.22 -1.39 16 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.83 8.91 37.16 0.33 -1.50 16 21 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 22 H 0.05 0.56 6.52 -51.93 -0.34 0.22 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.80 6.75 -51.93 -0.35 0.45 16 27 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 30 H 0.02 0.45 6.68 -51.93 -0.35 0.10 16 31 H 0.02 0.51 6.51 -51.93 -0.34 0.17 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.04 0.87 6.61 -51.92 -0.34 0.53 16 35 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -29.66 283.31 -8.31 -37.96 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.66 Total: -3.12 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -0.49 Total: -18.11 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.40 Total: -37.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.66 -8.31 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.644 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds