Wall clock time and date at job start Sun Mar 29 2020 21:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.57432 * 2 1 4 4 C 1.53124 * 109.52440 * 239.84267 * 2 1 3 5 5 C 1.53032 * 109.27817 * 182.43991 * 4 2 1 6 6 N 1.46847 * 109.52682 * 59.17958 * 5 4 2 7 7 C 1.46899 * 111.00044 * 174.15899 * 6 5 4 8 8 C 1.52997 * 109.47254 * 66.04569 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46756 * 59.99920 * 13 11 9 15 15 H 1.48490 * 109.47381 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47117 * 300.00527 * 13 11 9 17 17 C 1.46842 * 111.19604 * 298.25798 * 6 5 4 18 18 C 1.53035 * 109.52655 * 61.73774 * 17 6 5 19 19 H 1.09005 * 109.49923 * 60.76046 * 18 17 6 20 20 C 1.53003 * 109.53778 * 180.85759 * 18 17 6 21 21 H 1.09009 * 109.47050 * 180.15690 * 1 2 3 22 22 H 1.09004 * 109.47397 * 300.15572 * 1 2 3 23 23 H 1.08999 * 109.47585 * 60.16138 * 1 2 3 24 24 H 1.08997 * 109.49990 * 62.49690 * 4 2 1 25 25 H 1.08997 * 109.53124 * 302.39988 * 4 2 1 26 26 H 1.09003 * 109.46697 * 299.15746 * 5 4 2 27 27 H 1.09005 * 109.45482 * 179.19115 * 5 4 2 28 28 H 1.09002 * 109.47043 * 186.04640 * 7 6 5 29 29 H 1.09001 * 109.47354 * 306.04701 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 32 32 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.46292 * 181.75922 * 17 6 5 34 34 H 1.09008 * 109.46217 * 301.72586 * 17 6 5 35 35 H 1.08995 * 109.46937 * 179.82342 * 20 18 17 36 36 H 1.08996 * 109.47118 * 299.82898 * 20 18 17 37 37 H 1.09003 * 109.46897 * 59.82584 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2479 5 6 3.5708 -0.7751 -1.2117 6 7 4.0103 -1.4789 0.0000 7 6 5.4671 -1.6677 -0.0001 8 6 6.1578 -0.3061 0.0990 9 6 7.6523 -0.4998 0.0996 10 1 8.0679 -1.4946 0.0352 11 6 8.4891 0.5929 0.1812 12 7 7.9830 1.8043 0.2591 13 14 10.3416 0.3527 0.1826 14 1 10.7542 -0.3220 -1.0743 15 1 11.0121 1.6743 0.2775 16 1 10.7312 -0.4852 1.3451 17 6 3.5708 -0.7752 1.2115 18 6 2.0417 -0.7250 1.2478 19 1 1.6447 -1.7400 1.2674 20 6 1.5839 0.0268 2.4992 21 1 -0.3634 -1.0277 0.0028 22 1 -0.3634 0.5163 0.8886 23 1 -0.3634 0.5113 -0.8914 24 1 1.7161 -0.1890 -2.1393 25 1 1.6447 -1.7399 -1.2681 26 1 3.9674 0.2402 -1.2061 27 1 3.9376 -1.3034 -2.0917 28 1 5.7536 -2.2834 0.8524 29 1 5.7694 -2.1621 -0.9233 30 1 5.8713 0.3096 -0.7535 31 1 5.8556 0.1884 1.0222 32 1 8.5718 2.5731 0.3161 33 1 3.9379 -1.3033 2.0916 34 1 3.9674 0.2402 1.2059 35 1 0.4949 0.0646 2.5223 36 1 1.9485 -0.4897 3.3871 37 1 1.9824 1.0413 2.4798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252727643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:10 Heat of formation + Delta-G solvation = -47.483135 kcal Electronic energy + Delta-G solvation = -14652.105417 eV Core-core repulsion = 12427.159379 eV Total energy + Delta-G solvation = -2224.946038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46886 -36.79484 -34.85469 -33.09740 -31.49526 -28.91863 -27.49440 -25.79270 -23.80597 -23.00218 -21.53421 -20.28202 -18.59375 -16.64456 -16.31574 -16.21231 -15.58766 -15.35489 -15.15976 -14.53940 -14.22020 -13.99189 -13.69767 -13.06483 -12.91780 -12.85222 -12.74078 -12.70093 -12.50521 -12.47654 -11.95783 -11.90704 -11.55510 -11.45432 -11.32958 -10.99881 -10.94564 -10.57569 -9.11370 -8.23666 -6.36673 1.37104 1.40615 1.48624 2.37523 3.08425 3.11579 3.80387 3.88377 3.94172 4.16803 4.44101 4.47835 4.49711 4.64017 4.67246 4.70935 4.76314 4.85990 4.89804 4.93057 4.97373 5.02158 5.13483 5.13619 5.24624 5.28823 5.33804 5.43736 5.50238 5.55880 5.63126 5.73271 6.02253 6.28061 6.33437 6.80805 7.32925 8.87226 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050499 B = 0.006775 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.333944 B = 4132.020839 C = 4257.065731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.046 0.954 4 C -0.101 4.101 5 C 0.050 3.950 6 N -0.533 5.533 7 C 0.069 3.931 8 C 0.004 3.996 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.059 3.941 18 C -0.076 4.076 19 H 0.083 0.917 20 C -0.144 4.144 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.006 0.994 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.064 0.936 30 H -0.013 1.013 31 H -0.009 1.009 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.007 0.993 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 -4.617 0.304 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.065 0.935 4 C -0.139 4.139 5 C -0.078 4.078 6 N -0.256 5.256 7 C -0.059 4.059 8 C -0.035 4.035 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.190 1.190 17 C -0.069 4.069 18 C -0.094 4.094 19 H 0.101 0.899 20 C -0.201 4.201 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.025 0.975 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.005 0.995 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.102 -4.918 0.311 14.938 hybrid contribution 1.821 1.239 0.003 2.202 sum -12.281 -3.679 0.315 12.824 Atomic orbital electron populations 1.21788 0.92888 1.02495 1.02238 1.21217 0.97217 0.98126 0.94396 0.93496 1.21614 0.92534 1.01639 0.98077 1.22118 0.97162 0.95626 0.92896 1.62385 1.12195 1.48568 1.02464 1.22090 0.85798 0.96846 1.01138 1.19493 0.95284 0.94184 0.94520 1.21608 0.92779 0.93348 1.50588 0.91936 1.26023 1.04516 0.94777 0.94503 1.70111 1.37147 0.98915 1.51279 0.85455 0.78590 0.77446 0.79303 1.19030 1.20825 1.19014 1.22137 0.96570 0.95556 0.92675 1.21168 0.92479 1.00392 0.95404 0.89876 1.21827 1.02183 0.99493 0.96611 0.91766 0.91747 0.92170 0.90489 0.90332 0.97545 0.91168 0.91795 0.91740 0.99464 0.99114 0.92797 0.91794 0.97471 0.90124 0.92416 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.90 71.98 0.64 -1.93 16 2 C -0.09 -2.34 2.29 -10.72 -0.02 -2.37 16 3 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.10 -2.71 5.38 30.65 0.16 -2.55 16 5 C 0.05 1.79 5.05 86.32 0.44 2.23 16 6 N -0.53 -20.35 4.86 -896.37 -4.35 -24.71 16 7 C 0.07 3.06 5.30 86.30 0.46 3.52 16 8 C 0.00 0.19 4.27 29.85 0.13 0.32 16 9 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 10 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 12 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 13 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 C 0.06 2.15 4.12 86.33 0.36 2.50 16 18 C -0.08 -2.07 2.38 -10.74 -0.03 -2.10 16 19 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 20 C -0.14 -3.36 8.91 71.98 0.64 -2.72 16 21 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 22 H 0.06 1.09 6.52 -2.38 -0.02 1.08 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.01 0.26 6.75 -2.39 -0.02 0.25 16 27 H 0.07 2.42 8.06 -2.38 -0.02 2.40 16 28 H 0.06 2.77 8.14 -2.39 -0.02 2.76 16 29 H 0.06 2.78 8.06 -2.39 -0.02 2.76 16 30 H -0.01 -0.78 6.68 -2.39 -0.02 -0.79 16 31 H -0.01 -0.56 6.51 -2.39 -0.02 -0.58 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 34 H 0.01 0.30 6.61 -2.38 -0.02 0.29 16 35 H 0.08 1.49 6.51 -2.39 -0.02 1.47 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.09 283.31 2.42 -62.66 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.00 Total: 7.35 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 3.47 Total: -34.29 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -4.07 Total: -82.76 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.09 2.42 -62.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.178 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds