Wall clock time and date at job start Sun Mar 29 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99715 * 2 1 4 4 H 1.07996 * 120.00201 * 203.04291 * 3 2 1 5 5 C 1.38814 * 119.99714 * 23.04669 * 3 2 1 6 6 N 1.31614 * 120.00372 * 12.92478 * 5 3 2 7 7 Si 1.86805 * 119.99500 * 192.92354 * 5 3 2 8 8 H 1.48495 * 109.47091 * 60.00194 * 7 5 3 9 9 H 1.48503 * 109.46727 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47093 * 299.99823 * 7 5 3 11 11 C 1.46497 * 120.00187 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47344 * 89.99994 * 11 2 1 13 13 C 1.52999 * 109.47366 * 179.97438 * 12 11 2 14 14 C 1.53010 * 109.46928 * 64.99888 * 13 12 11 15 15 C 1.52999 * 109.46928 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47461 * 300.00222 * 15 14 13 17 17 C 1.53003 * 109.46971 * 59.99911 * 16 15 14 18 18 C 1.52994 * 109.47499 * 184.99934 * 13 12 11 19 19 H 1.08993 * 109.47625 * 275.12042 * 1 2 3 20 20 H 1.09003 * 109.47411 * 35.12458 * 1 2 3 21 21 H 1.09001 * 109.46884 * 155.11675 * 1 2 3 22 22 H 0.96998 * 120.00120 * 179.97438 * 6 5 3 23 23 H 1.09006 * 109.46850 * 330.00105 * 11 2 1 24 24 H 1.09000 * 109.46999 * 210.00145 * 11 2 1 25 25 H 1.09002 * 109.47401 * 59.99881 * 12 11 2 26 26 H 1.09000 * 109.47195 * 300.00030 * 12 11 2 27 27 H 1.09003 * 109.46872 * 305.00496 * 13 12 11 28 28 H 1.08998 * 109.46929 * 300.00213 * 14 13 12 29 29 H 1.09003 * 109.46848 * 60.00593 * 14 13 12 30 30 H 1.09002 * 109.47106 * 180.02562 * 15 14 13 31 31 H 1.09003 * 109.46872 * 60.00608 * 15 14 13 32 32 H 1.08996 * 109.46687 * 300.00541 * 16 15 14 33 33 H 1.08995 * 109.47301 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.46669 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46935 * 59.99875 * 17 16 15 36 36 H 1.09003 * 109.47517 * 300.00167 * 18 13 12 37 37 H 1.09002 * 109.46788 * 59.99993 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0074 0.1457 8 1 2.4196 4.2281 -1.3191 9 1 1.4741 5.0718 0.7488 10 1 3.6718 4.0475 0.7496 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2182 -3.0344 -1.4438 14 6 2.3415 -4.1304 -0.8344 15 6 3.1073 -5.4549 -0.8344 16 6 3.4718 -5.8334 -2.2714 17 6 4.3484 -4.7374 -2.8807 18 6 3.5821 -3.4126 -2.8809 19 1 -0.3634 0.0917 1.0235 20 1 -0.3634 0.8405 -0.5913 21 1 -0.3633 -0.9323 -0.4324 22 1 -0.0151 3.0661 1.4750 23 1 1.6084 -2.0286 0.5129 24 1 3.1500 -1.1385 0.5134 25 1 3.0416 -0.9499 -1.9568 26 1 1.5002 -1.8399 -1.9571 27 1 4.1289 -2.9279 -0.8543 28 1 2.0823 -3.8610 0.1895 29 1 1.4308 -4.2369 -1.4238 30 1 2.4826 -6.2358 -0.4007 31 1 4.0178 -5.3481 -0.2447 32 1 2.5613 -5.9401 -2.8610 33 1 4.0169 -6.7772 -2.2714 34 1 4.6077 -5.0069 -3.9045 35 1 5.2589 -4.6306 -2.2910 36 1 2.6714 -3.5190 -3.4704 37 1 4.2066 -2.6318 -3.3150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258674091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:59 Heat of formation + Delta-G solvation = -16.236294 kcal Electronic energy + Delta-G solvation = -14428.872290 eV Core-core repulsion = 12205.281217 eV Total energy + Delta-G solvation = -2223.591073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.61902 -35.61231 -32.80956 -30.76368 -30.55458 -27.40647 -25.72438 -23.69923 -22.43515 -21.09925 -19.82958 -19.46887 -16.56953 -15.38739 -14.69879 -14.43654 -14.06405 -13.82446 -13.48168 -13.32924 -12.70688 -12.21239 -12.07544 -11.83083 -11.50444 -11.14674 -10.99221 -10.77495 -10.72578 -10.69131 -10.43082 -10.26355 -10.11456 -9.89966 -9.79988 -9.64488 -9.49451 -8.44681 -6.61207 -5.62930 -3.08962 3.43682 3.48540 3.50007 4.57232 4.81937 4.88361 4.91951 5.33324 5.37055 5.51405 5.55815 5.64873 5.66602 5.66994 5.77105 5.87396 6.03580 6.10350 6.16099 6.25188 6.28626 6.38079 6.41538 6.48923 6.51932 6.70553 6.74217 6.85765 7.02108 7.15510 7.47305 7.81409 7.88439 8.50478 9.34137 9.98904 10.48534 11.41861 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055459 B = 0.006350 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.758590 B = 4408.579129 C = 4715.722353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.606 5.606 3 C -0.251 4.251 4 H 0.066 0.934 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.152 3.848 12 C -0.132 4.132 13 C -0.084 4.084 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.114 4.114 19 H 0.029 0.971 20 H 0.038 0.962 21 H -0.004 1.004 22 H 0.251 0.749 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -13.669 -5.917 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.329 5.329 3 C -0.381 4.381 4 H 0.084 0.916 5 C -0.199 4.199 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.025 3.975 12 C -0.173 4.173 13 C -0.103 4.103 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.151 4.151 19 H 0.047 0.953 20 H 0.057 0.943 21 H 0.015 0.985 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.761 -13.517 -5.822 15.468 hybrid contribution 0.338 1.005 -0.193 1.077 sum 5.099 -12.512 -6.016 14.790 Atomic orbital electron populations 1.20750 0.82902 0.95174 0.99242 1.43906 1.01767 1.00860 1.86351 1.19150 0.98157 0.85795 1.34954 0.91648 1.25013 0.97983 0.98442 0.98436 1.70059 1.19540 1.27116 1.38885 0.86354 0.78429 0.84013 0.77874 1.21181 1.21672 1.21001 1.20789 0.95699 0.87985 0.93015 1.22260 0.99190 0.94644 1.01171 1.21146 0.98610 0.95224 0.95365 1.21627 0.98254 0.93964 1.01362 1.21551 1.00211 0.97564 0.96379 1.21526 0.99635 0.97771 0.96644 1.21547 0.98573 0.95459 1.00054 1.21601 0.99834 0.96333 0.97350 0.95284 0.94337 0.98544 0.93836 0.94709 0.93972 0.92428 0.93063 0.91697 0.91552 0.92344 0.92542 0.92232 0.92281 0.92699 0.92645 0.92239 0.92328 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.24 8.98 59.85 0.54 4.78 16 2 N -0.61 -15.97 2.92 -181.12 -0.53 -16.50 16 3 C -0.25 -7.17 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 -0.03 5.10 -17.43 -0.09 -0.12 16 6 N -0.91 -27.46 10.71 55.49 0.59 -26.87 16 7 Si 0.90 22.45 29.57 -169.99 -5.03 17.42 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.15 3.26 5.40 -4.05 -0.02 3.24 16 12 C -0.13 -2.41 5.01 -26.73 -0.13 -2.55 16 13 C -0.08 -1.22 2.19 -90.62 -0.20 -1.42 16 14 C -0.11 -1.53 4.96 -26.73 -0.13 -1.66 16 15 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 16 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 17 C -0.12 -1.29 5.93 -26.70 -0.16 -1.45 16 18 C -0.11 -1.45 5.21 -26.71 -0.14 -1.59 16 19 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 20 H 0.04 1.06 7.34 -51.93 -0.38 0.67 16 21 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 22 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.70 6.50 -51.93 -0.34 0.37 16 24 H 0.04 0.91 8.04 -51.93 -0.42 0.50 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.94 6.57 -51.93 -0.34 0.59 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -29.96 286.48 -8.34 -38.30 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -6.90 Total: -5.69 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.80 Total: -10.97 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.06 Total: -43.37 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.96 -8.34 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.059 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds