Wall clock time and date at job start Sun Mar 29 2020 21:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99715 * 2 1 4 4 H 1.07996 * 120.00201 * 203.04291 * 3 2 1 5 5 C 1.38814 * 119.99714 * 23.04669 * 3 2 1 6 6 N 1.31614 * 120.00372 * 12.92478 * 5 3 2 7 7 Si 1.86805 * 119.99500 * 192.92354 * 5 3 2 8 8 H 1.48495 * 109.47091 * 60.00194 * 7 5 3 9 9 H 1.48503 * 109.46727 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47093 * 299.99823 * 7 5 3 11 11 C 1.46497 * 120.00187 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47344 * 89.99994 * 11 2 1 13 13 C 1.52999 * 109.47366 * 179.97438 * 12 11 2 14 14 C 1.53010 * 109.46928 * 64.99888 * 13 12 11 15 15 C 1.52999 * 109.46928 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47461 * 300.00222 * 15 14 13 17 17 C 1.53003 * 109.46971 * 59.99911 * 16 15 14 18 18 C 1.52994 * 109.47499 * 184.99934 * 13 12 11 19 19 H 1.08993 * 109.47625 * 275.12042 * 1 2 3 20 20 H 1.09003 * 109.47411 * 35.12458 * 1 2 3 21 21 H 1.09001 * 109.46884 * 155.11675 * 1 2 3 22 22 H 0.96998 * 120.00120 * 179.97438 * 6 5 3 23 23 H 1.09006 * 109.46850 * 330.00105 * 11 2 1 24 24 H 1.09000 * 109.46999 * 210.00145 * 11 2 1 25 25 H 1.09002 * 109.47401 * 59.99881 * 12 11 2 26 26 H 1.09000 * 109.47195 * 300.00030 * 12 11 2 27 27 H 1.09003 * 109.46872 * 305.00496 * 13 12 11 28 28 H 1.08998 * 109.46929 * 300.00213 * 14 13 12 29 29 H 1.09003 * 109.46848 * 60.00593 * 14 13 12 30 30 H 1.09002 * 109.47106 * 180.02562 * 15 14 13 31 31 H 1.09003 * 109.46872 * 60.00608 * 15 14 13 32 32 H 1.08996 * 109.46687 * 300.00541 * 16 15 14 33 33 H 1.08995 * 109.47301 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.46669 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46935 * 59.99875 * 17 16 15 36 36 H 1.09003 * 109.47517 * 300.00167 * 18 13 12 37 37 H 1.09002 * 109.46788 * 59.99993 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0074 0.1457 8 1 2.4196 4.2281 -1.3191 9 1 1.4741 5.0718 0.7488 10 1 3.6718 4.0475 0.7496 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2182 -3.0344 -1.4438 14 6 2.3415 -4.1304 -0.8344 15 6 3.1073 -5.4549 -0.8344 16 6 3.4718 -5.8334 -2.2714 17 6 4.3484 -4.7374 -2.8807 18 6 3.5821 -3.4126 -2.8809 19 1 -0.3634 0.0917 1.0235 20 1 -0.3634 0.8405 -0.5913 21 1 -0.3633 -0.9323 -0.4324 22 1 -0.0151 3.0661 1.4750 23 1 1.6084 -2.0286 0.5129 24 1 3.1500 -1.1385 0.5134 25 1 3.0416 -0.9499 -1.9568 26 1 1.5002 -1.8399 -1.9571 27 1 4.1289 -2.9279 -0.8543 28 1 2.0823 -3.8610 0.1895 29 1 1.4308 -4.2369 -1.4238 30 1 2.4826 -6.2358 -0.4007 31 1 4.0178 -5.3481 -0.2447 32 1 2.5613 -5.9401 -2.8610 33 1 4.0169 -6.7772 -2.2714 34 1 4.6077 -5.0069 -3.9045 35 1 5.2589 -4.6306 -2.2910 36 1 2.6714 -3.5190 -3.4704 37 1 4.2066 -2.6318 -3.3150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258674091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:58 Heat of formation + Delta-G solvation = -31.759978 kcal Electronic energy + Delta-G solvation = -14429.545448 eV Core-core repulsion = 12205.281217 eV Total energy + Delta-G solvation = -2224.264231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72738 -37.48697 -34.38601 -32.56281 -31.56680 -28.94398 -27.87010 -25.29881 -23.53649 -22.57652 -21.30332 -20.54032 -18.69353 -16.98754 -16.21156 -15.83084 -15.41390 -15.09765 -14.90853 -14.78948 -14.38593 -13.90193 -13.31568 -13.04677 -12.91651 -12.86575 -12.65082 -12.38119 -12.31038 -12.11979 -11.96213 -11.90341 -11.74890 -11.44279 -11.24129 -10.89711 -10.72964 -10.57335 -8.73859 -7.81775 -5.31190 1.45193 1.48151 1.54939 2.51394 3.30208 3.66355 3.86587 3.92324 4.02825 4.26332 4.37189 4.52795 4.63400 4.65755 4.67430 4.72127 4.82227 4.87019 4.91100 4.93751 5.11940 5.20373 5.22342 5.26843 5.32839 5.36703 5.43559 5.48555 5.54775 5.60079 5.64069 5.68563 5.71089 6.34098 7.16101 7.89480 8.33664 9.21193 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055459 B = 0.006350 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.758590 B = 4408.579129 C = 4715.722353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.625 5.625 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.274 1.274 11 C 0.150 3.850 12 C -0.117 4.117 13 C -0.078 4.078 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.112 4.112 19 H 0.004 0.996 20 H 0.012 0.988 21 H 0.029 0.971 22 H 0.248 0.752 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -14.916 -6.782 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.348 5.348 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.798 3.202 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.200 1.200 11 C 0.025 3.975 12 C -0.157 4.157 13 C -0.097 4.097 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.150 4.150 19 H 0.022 0.978 20 H 0.031 0.969 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.864 -14.799 -6.701 17.271 hybrid contribution 0.003 1.340 0.085 1.342 sum 5.867 -13.459 -6.616 16.104 Atomic orbital electron populations 1.20500 0.83039 0.95675 0.97480 1.44204 1.02099 1.01981 1.86554 1.19483 0.98421 0.87019 1.34485 0.91496 1.25828 0.98713 1.02002 0.98541 1.70230 1.20929 1.27684 1.40016 0.85297 0.77737 0.79343 0.77824 1.20507 1.21838 1.19994 1.20961 0.94997 0.86406 0.95135 1.22028 0.99180 0.96240 0.98259 1.21072 0.98135 0.93527 0.96963 1.21600 0.98285 0.94818 1.00417 1.21532 1.00142 0.96425 0.97316 1.21532 0.99824 0.98296 0.95778 1.21531 0.98363 0.94286 1.01137 1.21569 1.00092 0.97572 0.95727 0.97782 0.96867 0.95300 0.94273 0.93441 0.94634 0.94203 0.93586 0.91847 0.92664 0.92490 0.91379 0.92056 0.92159 0.90928 0.91200 0.92034 0.92416 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.31 8.98 127.77 1.15 10.46 16 2 N -0.62 -33.17 2.92 -726.94 -2.12 -35.29 16 3 C -0.26 -15.18 9.65 84.03 0.81 -14.37 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 5 C -0.06 -3.27 5.10 84.86 0.43 -2.84 16 6 N -0.94 -57.78 10.71 21.65 0.23 -57.55 16 7 Si 0.97 46.38 29.57 68.60 2.03 48.41 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 C 0.15 6.40 5.40 86.38 0.47 6.87 16 12 C -0.12 -4.20 5.01 30.59 0.15 -4.05 16 13 C -0.08 -2.15 2.19 -10.79 -0.02 -2.17 16 14 C -0.11 -2.83 4.96 30.60 0.15 -2.68 16 15 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 16 C -0.12 -2.06 5.92 30.60 0.18 -1.87 16 17 C -0.12 -2.19 5.93 30.61 0.18 -2.01 16 18 C -0.11 -2.66 5.21 30.61 0.16 -2.50 16 19 H 0.00 0.22 7.34 -2.39 -0.02 0.21 16 20 H 0.01 0.71 7.34 -2.39 -0.02 0.70 16 21 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 22 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 23 H 0.05 1.89 6.50 -2.38 -0.02 1.87 16 24 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.48 6.57 -2.39 -0.02 1.47 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -63.56 286.48 4.97 -58.59 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 0.99 Total: 3.12 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.84 Total: -17.28 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -1.89 Total: -92.84 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -63.56 4.97 -58.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.830 kcal (2) G-P(sol) polarization free energy of solvation -63.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds